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0
votes
3
replies
7.0k
views
Plotting Venn diagram for multiple BED files
ngs Venn diagram
updated 4.7 years ago by 20 • written 7.2 years ago by ▴ 400
7
votes
16
replies
5.9k
views
Switch the position of REF/ALT alleles based on AA (ancestral allele) annotations in VCF
vcf ngs
updated 4.8 years ago by ▴ 30 • written 6.7 years ago by ▴ 400
0
votes
6
replies
2.1k
views
Plotting F3 statistics values on world map
R ngs
5.4 years ago by SOHAIL ▴ 400
8
votes
11
replies
4.2k
views
reference genome hs37d5 with PhiX
reference genome ngs
updated 21 months ago by 141k • written 5.6 years ago by ▴ 400
0
votes
1
reply
1.4k
views
Select the transversions only from SNP data set
ngs plink
5.5 years ago by SOHAIL ▴ 400
0
votes
4
replies
3.1k
views
Remove ambiguous calls in the VCF file
VCF
updated 5.6 years ago by 82k • written 5.6 years ago by ▴ 400
2
votes
3
replies
4.8k
views
Genotyping with samtools/bcftools
samtools bcftools ngs
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 400
9
votes
3
replies
3.2k
views
Optimizing Java Jar's parameters while processing large high throughput sequencing data
ngs java
updated 5.8 years ago by 20 • written 7.8 years ago by ▴ 400
0
votes
1
reply
3.3k
views
Calculate the genotype frequency
ngs vcf
updated 6.0 years ago by ▴ 240 • written 6.0 years ago by ▴ 400
11
votes
4
replies
12k
views
Haplotype Phasing with Shapeit2
ngs
updated 6.1 years ago by • 0 • written 7.7 years ago by ▴ 400
3
votes
8
replies
5.5k
views
6 follow
flagstats results show 0.0 % properly paired reads
next-gen alignment
updated 8 months ago by • 0 • written 8.8 years ago by ▴ 400
0
votes
1
reply
3.2k
views
tools for Population branch statistics (PBS)
selection scans ngs
updated 6.2 years ago by ▴ 670 • written 6.6 years ago by ▴ 400
20
votes
10
replies
9.8k
views
calculate Per variant Heterozygosity from VCF file
ngs vcf
updated 6.3 years ago by 87k • written 6.3 years ago by ▴ 400
3
votes
3
replies
5.0k
views
How to get adapter information from SRA dump FASTQ file??
next-gen
updated 6.6 years ago by 20k • written 7.9 years ago by ▴ 400
5
votes
1
reply
4.2k
views
About Accessible Genome Mask
ngs 1000 genomes
updated 6.9 years ago by ▴ 50 • written 7.5 years ago by ▴ 400
0
votes
0
replies
2.3k
views
PSMC analysis: input data processing, mutation rate, generation time
psmc
7.1 years ago by SOHAIL ▴ 400
3
votes
7
replies
12k
views
Generate Consensus sequence from BAM file
samtools mpileup psmc
7.2 years ago by SOHAIL ▴ 400
3
votes
3
replies
1.9k
views
comparing coordinates between two files
linux ngs
updated 7.3 years ago by 35k • written 7.3 years ago by ▴ 400
7
votes
4
replies
5.4k
views
P-Value calculation from iHS and XP-EHH scores
selection selscan ngs statistics R
updated 23 months ago by ▴ 20 • written 7.3 years ago by ▴ 400
6
votes
6
replies
3.4k
views
How to find variants that are common in one population but rare in others (population differentiation)?
SNP wgs variant filtration population genomics
7.3 years ago by SOHAIL ▴ 400
14
votes
4
replies
11k
views
Principal Component Analysis using SNP data ste
ngs PCA analysis
updated 7.5 years ago by 24k • written 7.5 years ago by ▴ 400
0
votes
3
replies
2.4k
views
How to combine variants??
ngs variant manioulation
updated 7.5 years ago by 47k • written 7.5 years ago by ▴ 400
6
votes
7
replies
3.6k
views
Determine the percentage of the human genome covered by the BED interval file
ngs genome
updated 7.5 years ago by 5.8k • written 7.5 years ago by ▴ 400
2
votes
3
replies
3.5k
views
Filtering no-calls from VCF file
ngs vcftools
updated 13 months ago by 43k • written 7.6 years ago by ▴ 400
0
votes
4
replies
3.1k
views
split reads for different lanes in BAM files
ngs
7.8 years ago by SOHAIL ▴ 400
1
vote
6
replies
4.1k
views
Parallelizing SAMTOOLS: how to make my command run faster?
next-gen sequencing samtools
7.8 years ago by SOHAIL ▴ 400
0
votes
0
replies
1.5k
views
Difference in sequencing analysis between Blood-derived and Saliva-derived DNA Samples
High-throughput sequencing analysis sequencing
7.8 years ago by SOHAIL ▴ 400
2
votes
2
replies
3.7k
views
Processing FASTQ files after fastq-dump
sequencing Linux command-line
updated 7.9 years ago by ★ 5.1k • written 7.9 years ago by ▴ 400
10
votes
7
replies
3.4k
views
Edit strings in FASTQ file
Linux
updated 7.9 years ago by ★ 2.7k • written 7.9 years ago by ▴ 400
3
votes
2
replies
10k
views
BWA-MEM Vs BWA-ALN
next-gen genome alignment
8.0 years ago by SOHAIL ▴ 400
3
votes
4
replies
17k
views
VCF to BCF file conversion
NGS Genomics
updated 18 months ago by 43k • written 8.8 years ago by ▴ 400
31 results • Page 1 of 1
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