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Showing :
questions
7
votes
7
replies
6.1k
views
6 follow
Get BUSCO gene descriptions
BUSCO
de novo assembly
updated 20 months ago by
Ram
43k • written 8.1 years ago by
pbigbig
▴ 250
0
votes
3
replies
695
views
Asking for correction method for mRNA degradation bias
mRNA
Isoform
switching
RNASeq
degradation
2.0 years ago by
pbigbig
▴ 250
1
vote
2
replies
831
views
Ranking genes based on importance rank from Random forest classifying model
selection
random
analysis
feature
forest
transcriptome
2.4 years ago by
pbigbig
▴ 250
1
vote
6
replies
1.3k
views
Pile up reads without reference?
mapping
pileup
visualization
2.4 years ago by
pbigbig
▴ 250
0
votes
2
replies
859
views
miRNA quantification on custom database
miRNA
RNA-Seq
4.7 years ago by
pbigbig
▴ 250
1
vote
6
replies
1.5k
views
Calculate scaling factor for RNAseq data
RNA-Seq
normalization
updated 4.8 years ago by
swbarnes2
14k • written 4.9 years ago by
pbigbig
▴ 250
12
votes
5
replies
5.5k
views
which matrix should be used to draw heatmap in RNAseq?
RNAseq
heatmap
normalization
updated 2.2 years ago by
Thind amarinder
▴ 340 • written 4.9 years ago by
pbigbig
▴ 250
0
votes
1
reply
1.6k
views
Mapping both PE reads and Single-end reads into transcriptome
differential expression
Trinity
strand-specific
5.5 years ago by
pbigbig
▴ 250
0
votes
0
replies
2.4k
views
Merging assemblies with GAM-NGS
platanus
gam-ngs
newbler
updated 21 months ago by
Ram
43k • written 8.4 years ago by
pbigbig
▴ 250
0
votes
2
replies
1.0k
views
Masking short sequences between gaps in genome assembly
genome assembly
masking
5.7 years ago by
pbigbig
▴ 250
0
votes
1
reply
2.0k
views
extract SNPs corresponding position on BLAST subject sequence
SNP
BLAST
extract sequence
updated 6.4 years ago by
Biostar
20 • written 6.6 years ago by
pbigbig
▴ 250
1
vote
2
replies
3.1k
views
Merging BAM file before running GATK or merging vcf output
GATK
SNP
vcf
updated 6.7 years ago by
Lila M
★ 1.2k • written 6.7 years ago by
pbigbig
▴ 250
0
votes
2
replies
1.4k
views
Transcriptomes comparison and check for shared transcripts with arbitrary similarity
rnaseq
transcriptome
de novo assembly
7.1 years ago by
pbigbig
▴ 250
1
vote
2
replies
2.5k
views
Confusion regarding Trinity analyze_diff_expr.pl
Trinity
Differential expression
transcriptome
updated 7.4 years ago by
Farbod
★ 3.4k • written 7.4 years ago by
pbigbig
▴ 250
20
votes
16
replies
12k
views
GC content calculation
GC content
trinity
transcriptome
updated 7.4 years ago by
Brian Bushnell
20k • written 7.4 years ago by
pbigbig
▴ 250
6
votes
2
replies
6.7k
views
Tools for categorize COG/KOG list
KOGs
COGs
updated 7.5 years ago by
Farbod
★ 3.4k • written 7.5 years ago by
pbigbig
▴ 250
6
votes
12
replies
3.9k
views
Cannot download gi list from NCBI protein
ncbi
nr
7.5 years ago by
pbigbig
▴ 250
3
votes
4
replies
8.6k
views
Extracting ids of a cluster in heatmap
pheatmap
heatmap
RNAseq
updated 7.6 years ago by
igor
13k • written 7.6 years ago by
pbigbig
▴ 250
0
votes
4
replies
2.6k
views
Geneset enrichment in non-model organism with DAVID
DAVID
geneset enrichment
updated 7.6 years ago by
Pappu
★ 2.1k • written 7.6 years ago by
pbigbig
▴ 250
1
vote
0
replies
2.2k
views
Running GlimmerHMM on multifasta file
GlimmerHMM
gene prediction
7.9 years ago by
pbigbig
▴ 250
0
votes
2
replies
3.5k
views
BLAST run - assigning which one as query and subject?
BLAST
updated 8.1 years ago by
Michael
54k • written 8.1 years ago by
pbigbig
▴ 250
9
votes
8
replies
4.9k
views
Deduplicate reads in Illumina RNAseq
deduplicate
RNA-Seq
prinseq
dereplication
fastqc
updated 8.2 years ago by
Devon Ryan
104k • written 8.2 years ago by
pbigbig
▴ 250
1
vote
4
replies
2.0k
views
Comparing a draft genome with its neighbour species genomes
genome-assembly
de-novo
mummer
updated 22 months ago by
Ram
43k • written 8.2 years ago by
pbigbig
▴ 250
0
votes
3
replies
1.3k
views
data hosting for WebAUGUSTUS
augustus
updated 8.3 years ago by
winter_li
▴ 60 • written 8.3 years ago by
pbigbig
▴ 250
0
votes
2
replies
1.8k
views
de novo transcriptome assembly
RNA-Seq
transcriptome
velvet
oases
updated 8.4 years ago by
seta
★ 1.9k • written 8.4 years ago by
pbigbig
▴ 250
5
votes
2
replies
1.9k
views
How to extract data from multiple files
grep
updated 20 months ago by
Ram
43k • written 8.6 years ago by
pbigbig
▴ 250
0
votes
0
replies
1.7k
views
traversal stats explanations
assembly
minia
contig
traversal
quast
updated 20 months ago by
Ram
43k • written 8.6 years ago by
pbigbig
▴ 250
1
vote
2
replies
3.7k
views
Scaffolding with SSPACE returned scaffold the same as initial contigs set
SSPACE
minia
updated 19 months ago by
Ram
43k • written 8.7 years ago by
pbigbig
▴ 250
2
votes
10
replies
4.4k
views
kmergenie keeps suggesting the highest kmer in range as the suitable one (?)
kmergenie
updated 18 months ago by
Ram
43k • written 8.7 years ago by
pbigbig
▴ 250
16
votes
12
replies
8.6k
views
Jellyfish -C option explanation
jellyfish
updated 18 months ago by
Ram
43k • written 8.8 years ago by
pbigbig
▴ 250
3
votes
8
replies
3.9k
views
kmergenie can not execute on a file because directory not exist?
kmergenie
updated 18 months ago by
Ram
43k • written 8.8 years ago by
pbigbig
▴ 250
28
votes
13
replies
25k
views
7 follow
Run multiple fastq.gz files with FastQC and yield single report?
fastQC
sequencing
quality-control
updated 18 months ago by
Ram
43k • written 8.8 years ago by
pbigbig
▴ 250
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