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Showing :
questions
0
votes
0
replies
475
views
How to sort graph based on fold change and instead of activated and suppressed, how to add up and downregulated in graph header?
clusterprofiler
13 months ago by
sharmatina189059
▴ 110
1
vote
1
reply
487
views
parse csv file
awk
csv
updated 14 months ago by
Ram
43k • written 15 months ago by
sharmatina189059
▴ 110
1
vote
1
reply
607
views
Weighted coexpression network analysis
Networkanalyst
RNASeq
database
STRING
R
updated 16 months ago by
seidel
11k • written 16 months ago by
sharmatina189059
▴ 110
4
votes
6
replies
867
views
bash script error to copy files from multiple directories to one directory
bash
updated 17 months ago by
Ram
43k • written 17 months ago by
sharmatina189059
▴ 110
0
votes
3
replies
1.4k
views
How to extract multi-line protein sequences with Ids present in headers ?
PERL
awk
Sed
updated 2.2 years ago by
jena
▴ 290 • written 4.1 years ago by
sharmatina189059
▴ 110
0
votes
5
replies
2.2k
views
can we retrieve protein sequences from the clusters of CD-hit?
CD-Hit
protein sequences
updated 2.4 years ago by
Md
▴ 10 • written 3.3 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
502
views
how to plot genetic struture of bacterial genes?
bacteria
plot
gene
updated 2.7 years ago by
Ram
43k • written 2.8 years ago by
sharmatina189059
▴ 110
1
vote
0
replies
708
views
plot Roary results for oan genome analysis
R
Roary
updated 10 months ago by
Ram
43k • written 2.9 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
480
views
Operon Mapping
SLING
operon
Multigeneblast
3.0 years ago by
sharmatina189059
▴ 110
0
votes
6
replies
2.8k
views
Calculate Dn/Ds for nucleotide sequences using codeml, hyphy or SNAP.
Paml
codeml
SNAP
hyphy
3.3 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
544
views
codeml.txt file isnot generating.
Codeml
paml
dn/ds
3.3 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
789
views
How to get variation data from MSA file generated using ClustalW for protein sequences?
clustalw
MSA
variation
updated 3.3 years ago by
Biostar
20 • written 3.3 years ago by
sharmatina189059
▴ 110
6
votes
5
replies
1.2k
views
how to unique a file row-wise?
awk
perl
sed
linux
updated 3.3 years ago by
DareDevil
★ 4.3k • written 3.3 years ago by
sharmatina189059
▴ 110
0
votes
2
replies
884
views
How to read a multiple sequence alignment file?
Multiple-sequence-alignment
updated 12 months ago by
Ram
43k • written 3.3 years ago by
sharmatina189059
▴ 110
4
votes
2
replies
914
views
How Can I plot this data in a heatmap?
R
Heatmap
Pathways
Uniprot
updated 3.5 years ago by
Alex Reynolds
35k • written 3.5 years ago by
sharmatina189059
▴ 110
0
votes
4
replies
870
views
Mapping a draft sequence to a finished sequence using MUMmer.
MUMmer
3.6 years ago by
sharmatina189059
▴ 110
6
votes
10
replies
3.5k
views
Retrieve multi-line fasta sequences using list of locus tag
sequence
updated 3.7 years ago by
simiyu86wekesa
• 0 • written 5.9 years ago by
sharmatina189059
▴ 110
0
votes
2
replies
748
views
why this code is not deleting entries from mysql table?
php
mysql
updated 3.8 years ago by
Biostar
20 • written 3.9 years ago by
sharmatina189059
▴ 110
2
votes
4
replies
1.0k
views
One gene shows alignment with core sequences as well as with accessory gene sequences at 50% identity?
Pan-Genome with BPGA
BPGA
updated 4.1 years ago by
Mensur Dlakic
★ 27k • written 4.1 years ago by
sharmatina189059
▴ 110
0
votes
3
replies
647
views
Why blast with same query sequence shows two different query length?
blast
updated 4.1 years ago by
GenoMax
142k • written 4.1 years ago by
sharmatina189059
▴ 110
0
votes
6
replies
886
views
Why Genome coverage is missing for some assemblies?
next-gen
Genome coverage
updated 4.2 years ago by
andres.firrincieli
3.6k • written 4.2 years ago by
sharmatina189059
▴ 110
0
votes
4
replies
823
views
automate command using bash or perl script?
assembly
RAST
PERL
BASH
updated 4.3 years ago by
JC
13k • written 4.3 years ago by
sharmatina189059
▴ 110
0
votes
4
replies
935
views
Setting up local blast in webserver
BLAST PHP and MYSQL
4.3 years ago by
sharmatina189059
▴ 110
0
votes
1
reply
1.7k
views
Pathway annotation using sequence alignment
alignment
KEGG
BLASTKOALA
updated 4.9 years ago by
Biostar
20 • written 6.5 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
1.0k
views
Pan-genome using BPGA
genome
4.9 years ago by
sharmatina189059
▴ 110
1
vote
2
replies
1.3k
views
Discriminating ortholog and paralogs using Cd-hit
genome
gene
5.2 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
707
views
What does 16/304 MIC value mean?
Life sciences
5.3 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
694
views
How to draw gene architecture of bacterial genome using specific coordinates?
genome
5.5 years ago by
sharmatina189059
▴ 110
1
vote
7
replies
2.1k
views
Is there a tool for making a synteny blocks of a gene with its downstream and upstream genes using a bacterial genome sequence?
genome
updated 5.5 years ago by
Joseph Hughes
★ 3.0k • written 5.5 years ago by
sharmatina189059
▴ 110
4
votes
12
replies
5.0k
views
how to change fasta headers?
sequence
updated 5.6 years ago by
Hugo
▴ 380 • written 5.6 years ago by
sharmatina189059
▴ 110
8
votes
9
replies
3.1k
views
how to download all protein sequnces of a bacteria using ncbi ftp site?
ncbi
updated 5.7 years ago by
Joe
21k • written 5.7 years ago by
sharmatina189059
▴ 110
1
vote
3
replies
2.1k
views
How to use genewise using pubmed.mineR ?
R
5.7 years ago by
sharmatina189059
▴ 110
1
vote
11
replies
2.4k
views
Row and coloumn names do not display on x and Y axis in heatmaply.
heatmap
updated 5.9 years ago by
WouterDeCoster
47k • written 5.9 years ago by
sharmatina189059
▴ 110
0
votes
3
replies
1.3k
views
Compacted de-bruijn graph
assembly
updated 5.9 years ago by
lakhujanivijay
5.8k • written 5.9 years ago by
sharmatina189059
▴ 110
0
votes
6
replies
1.8k
views
What is the difference between complete genome and chromosome at NCBI? Why these two terms have been mentioned differently?
NCBI
6.0 years ago by
sharmatina189059
▴ 110
4
votes
6
replies
1.4k
views
Query regarding RCSBPDB
RCSB-PDB
updated 6.0 years ago by
cc
▴ 20 • written 6.6 years ago by
sharmatina189059
▴ 110
0
votes
2
replies
1.4k
views
STRING database threshold value
genome
STRING database
updated 6.1 years ago by
Biostar
20 • written 6.2 years ago by
sharmatina189059
▴ 110
0
votes
2
replies
1.0k
views
Why one genbank entry has multiple CDS?
genome
updated 6.3 years ago by
Asaf
10k • written 6.3 years ago by
sharmatina189059
▴ 110
0
votes
1
reply
2.8k
views
Working with PPI using STRING database
string database
R
6.3 years ago by
sharmatina189059
▴ 110
1
vote
3
replies
2.7k
views
Query regarding BLASTKOALA (KEGG) for pathway annotation
BLASTKOALA
Pathway annotation
updated 6.4 years ago by
natasha.sernova
★ 4.0k • written 6.6 years ago by
sharmatina189059
▴ 110
3
votes
4
replies
4.9k
views
creating a heatmap with R and retrieve cluster data from dendogram
R
updated 6.4 years ago by
EagleEye
7.5k • written 6.4 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
1.2k
views
Retrieving biochemical reaction using a list of EC numbers .
EC numbers
bacterial genome annotation
6.5 years ago by
sharmatina189059
▴ 110
2
votes
12
replies
1.4k
views
EC file parsing
bash
shell
updated 13 months ago by
Ram
43k • written 6.5 years ago by
sharmatina189059
▴ 110
0
votes
1
reply
1.2k
views
Query to retrieve pathway data of an organism using BioCyc
Biocyc
API
Data mining
updated 6.5 years ago by
Biostar
20 • written 6.5 years ago by
sharmatina189059
▴ 110
2
votes
8
replies
2.1k
views
Retrieve data from Excel sheet for Mysql table
MySQL
Excel
Perl
PHP
updated 6.5 years ago by
GenoMax
142k • written 6.5 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
2.4k
views
Pathway annotation using KEGG
KEGG
6.5 years ago by
sharmatina189059
▴ 110
0
votes
0
replies
1.7k
views
KEGG BLASTKOALA parameters
BLASTKOALA
6.6 years ago by
sharmatina189059
▴ 110
0
votes
1
reply
1.5k
views
Query regarding KEGG database
KEGG
Interacting pathways
6.6 years ago by
sharmatina189059
▴ 110
6
votes
9
replies
2.0k
views
KEGG data parse
R
data parsing
updated 6.6 years ago by
Paul
★ 1.5k • written 6.6 years ago by
sharmatina189059
▴ 110
2
votes
2
replies
1.7k
views
problem in fetching data using excel
genome
KEGG data
updated 6.6 years ago by
george.ry
★ 1.2k • written 6.6 years ago by
sharmatina189059
▴ 110
66 results • Page
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