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Showing :
questions
3
votes
7
replies
1.6k
views
magicblast aganist local nr database
blast
nr
local
magicblast
3.5 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
5
replies
6.4k
views
increase spacing between groups in a bar plot
ggplot2
barplot
spacing
3.5 years ago by
Assa Yeroslaviz
★ 1.8k
13
votes
16
replies
1.8k
views
How to split a data.frame and calculate a row-wise average
data.frame
tidyverse
updated 3.5 years ago by
ATpoint
82k • written 3.5 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
2
replies
11k
views
long ggtitle in a DimPlot
ggplot
ggtitle
dimplot
updated 3.6 years ago by
zx8754
11k • written 3.6 years ago by
Assa Yeroslaviz
★ 1.8k
17
votes
4
replies
6.8k
views
Coverage For Fastq Files
r
coverage
short
updated 3.6 years ago by
Biostar
20 • written 12.8 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
16
replies
4.1k
views
GC content of 10x Genomics
fastqc
10x
GC content
updated 3.7 years ago by
Eugene A
▴ 180 • written 5.0 years ago by
Assa Yeroslaviz
★ 1.8k
7
votes
8
replies
1.6k
views
adding a sequence to a genome
fasta
insert
3.7 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
1.5k
views
Memory Error when running `scrublet`
scrublet
scRNA-seq
doublet
3.7 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
4
replies
1.4k
views
Mapping different mouse strains to mm10
hybrid-mouse
RNA-Seq
scRNA
3.7 years ago by
Assa Yeroslaviz
★ 1.8k
5
votes
5
replies
7.2k
views
Converting scRNA-Seq to Bulk-RNASeq
scRNASeq
bulk-RNASeq
RNA-Seq
single-cell
updated 17 days ago by
veldahan86
• 0 • written 3.8 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
1
reply
3.0k
views
subsetting seurat object with multiple samples
scRNA-Seq
seurat
updated 3.8 years ago by
jared.andrews07
★ 16k • written 3.8 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
751
views
coverage per chromosome for bisulphite Seq data show unexpected distribution
bismark
bisulphite
BS-Seq
chromosome coverage
updated 3.9 years ago by
Biostar
20 • written 3.9 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
8
replies
1.3k
views
Error in Heatmap creation with RnBeads
BS-Seq
RnBeads
updated 3.9 years ago by
mscherer
▴ 50 • written 3.9 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
2
replies
2.1k
views
What sequence do I get when using paired-end stranded protocol
RNA-Seq
directional
stranded
paired-end
sequencing
updated 3.9 years ago by
caggtaagtat
★ 1.9k • written 3.9 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
4
replies
1.9k
views
Run RnBeads with 'bismarkCytosine' files
rnbeads
bismark
'bismarkCytosine'
updated 3.9 years ago by
mscherer
▴ 50 • written 4.0 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
6
replies
1.5k
views
translating a bam file to protein sequences
bam
protein
translate
samtools
3.9 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
4
replies
1.6k
views
load.rnb.set throws multiple warnings when uploading an object
RnBeads
Bi-Sulphite-Seq
updated 4.0 years ago by
mscherer
▴ 50 • written 4.0 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
1
reply
998
views
creating interactive plots with bigPint in a DESeq2 analysis
bigPint
deseq2
plots
RNA-Seq
updated 4.0 years ago by
suzuBell
▴ 60 • written 4.2 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
0
replies
891
views
annovar mpileup2cns and mpileup2indel give different results
annovar
SNP
variant-analysis
4.1 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
4
replies
1.7k
views
Calculate correlations between ChipSeq data sets
chipseq
correlation
peaks
bedgraph
macs2
updated 4.1 years ago by
Rory Stark
★ 2.0k • written 4.1 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
2
replies
1.2k
views
sample-specific filtering of counts matrix
counts
RNA-Seq
deseq2
condition
4.1 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
7
replies
1.5k
views
sorting for bedtools genomecov doesn't work properly
bedtools
sort
bedpe
RNA-Seq
bedgraph
updated 4.2 years ago by
Kevin Blighe
87k • written 4.2 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
6
replies
1.7k
views
bcl2fastq results in Poly-N in R1
bcl2fastq
paired-end
RNA-Seq
scRNA-Seq
single-cell
updated 4.2 years ago by
GenoMax
141k • written 4.2 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
3
replies
2.5k
views
No rule keywords allowed after run in snakefile
snakemake
run
python
updated 4.2 years ago by
Thibault D.
▴ 700 • written 4.2 years ago by
Assa Yeroslaviz
★ 1.8k
12
votes
15
replies
8.6k
views
7 follow
GSEA PreRanked lists from DESeq2 results table
gsea
deseq2
preranked
fgsea
updated 4.2 years ago by
jomo018
▴ 720 • written 4.2 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
3
replies
2.8k
views
missing coeeficients in resultsNames(dds)
deseq2
design
4.3 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
2
replies
2.3k
views
salmon quantification vs. star mapping
salmon
star
alignment
mapping
4.3 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
3
replies
4.2k
views
analysing RNASeq with spike-In
DE-genes
spike-In
normalization
DESeq
updated 15 months ago by
Ram
43k • written 8.9 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.7k
views
Error in converting bed file to interval using Picard
picard
BedToIntervalList
agilent
exome
WES
4.4 years ago by
Assa Yeroslaviz
★ 1.8k
7
votes
11
replies
1.2k
views
Analyzing Whole exome Seq for mouse
WES
mouse
capture
exome
4.4 years ago by
Assa Yeroslaviz
★ 1.8k
10
votes
9
replies
1.3k
views
Mapping whole exome sequencing
WES
exome
bwa
gatk
updated 4.4 years ago by
WouterDeCoster
47k • written 4.4 years ago by
Assa Yeroslaviz
★ 1.8k
9
votes
5
replies
2.5k
views
how to index different genomes with snakemake with different parameters?
snakemake
indexing
mapping
updated 4.5 years ago by
Eric Lim
★ 2.1k • written 4.5 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
5
replies
8.4k
views
problem with missing input file in snakemake rule
snakemake
rule
mapping
star
4.6 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
4
replies
1.6k
views
snakemake errors and threads
snakemake
star
align
threads
4.6 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
608
views
Setting the experimental design in a germline translatome analysis
translation profiling
ribo-seq
trap-seq
4.6 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
4
replies
9.7k
views
How To Extract Reads With Wrong Insert Size With Samtools
bam
samtools
awk
updated 4.7 years ago by
Biostar
20 • written 11.5 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
4
replies
1.4k
views
keep chromosome names in a bigwig file
rtracklayer
import.bw
bigwig
4.8 years ago by
Assa Yeroslaviz
★ 1.8k
11
votes
6
replies
4.5k
views
Analyzing ChIP-seq without input
ChIP-Seq
normalisation
4.8 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
3
replies
1.0k
views
understanding bowtie2 unmapped reads
bowtie2
unmapped-reads
fastq
updated 4.9 years ago by
lieven.sterck
15k • written 4.9 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
5
replies
2.3k
views
fastqc of chipseq dataset - two peaks in GC content
fastqc
GC content
ChIP-Seq
peaks
updated 5.0 years ago by
Biostar
20 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.8k
3
votes
11
replies
1.6k
views
comparing an assembly against close relatives
de-novo
assembly
blast
trinity
updated 5.0 years ago by
colindaven
6.4k • written 5.1 years ago by
Assa Yeroslaviz
★ 1.8k
2
votes
5
replies
2.5k
views
identifying transgene insertion site in WGS
WGS
insertion site
trangene
de-novo
soap
updated 5.0 years ago by
d-cameron
★ 2.9k • written 5.0 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
3
replies
1.7k
views
Waddington optimal transport for single-cell analysis
wot
single-cell
10x
RNA-Seq
Waddington
5.1 years ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
622
views
converting a vector of character strings to separate objects
R
updated 5.1 years ago by
zx8754
11k • written 5.1 years ago by
Assa Yeroslaviz
★ 1.8k
4
votes
6
replies
3.1k
views
high duplication levels in R1 reads of 10x Genomics samples
10x
duplication
RNA-Seq
fastqc
updated 5.2 years ago by
i.sudbery
19k • written 5.2 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
3
replies
1.0k
views
can delly identify multiple copies of a unique deletion?
delly
cnv
updated 5.2 years ago by
Vitis
★ 2.5k • written 5.2 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
2
replies
1.3k
views
What is the best way to costract a Crispr library
crispr
library
sgRNA
5.3 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
734
views
combine shRNA-Seq on gene level
shRNA-seq
NGS
limma
roast
5.4 years ago by
Assa Yeroslaviz
★ 1.8k
0
votes
0
replies
1.2k
views
calculating extinction coefficient for thousands of peptides
extinction
extinction coefficient
peptides
cran
5.5 years ago by
Assa Yeroslaviz
★ 1.8k
47
votes
10
replies
22k
views
9 follow
The Difference Between Directional And Nondirectional Sequencing
non
sequencing
rna
updated 5.8 years ago by
julianasrinjuli
• 0 • written 12.3 years ago by
Assa Yeroslaviz
★ 1.8k
197 results • Page
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