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546
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How to obtain spliced and unspliced counts from parse biosciences generated count data ?
scrnaseq transcriptomics single-cell
updated 8 months ago by 6.5k • written 8 months ago by ▴ 10
0
votes
2
replies
743
views
Difference in count values depends on tool and reference genome version
RNA-seq
updated 19 months ago by 45k • written 19 months ago by ▴ 10
4
votes
3
replies
897
views
Getting less DE genes when incorporating all samples
RNA-seq differential-expression deseq2
updated 19 months ago by ★ 1.9k • written 19 months ago by ▴ 10
0
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0
replies
635
views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter motif
updated 22 months ago by 45k • written 22 months ago by ▴ 10
2
votes
1
reply
2.0k
views
DESEq2 results : low counts too many genes
RNA-seq differential-expression deseq2
updated 2.0 years ago by 45k • written 2.1 years ago by ▴ 10
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5
replies
1.6k
views
DESEQ2 analysis - PCA plot
RNA-seq differential-expression deseq2
updated 2.2 years ago by ▴ 370 • written 2.2 years ago by ▴ 10
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1
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1.6k
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Comment: Comment: DESEQ2 analysis - PCA plot
2.2 years ago by shome ▴ 10
3
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1
reply
702
views
Reference genome to map embryonic mouse sequences
genome RNA-seq mouse bulk
updated 2.5 years ago by 89k • written 2.5 years ago by ▴ 10
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1
reply
1.8k
views
Comment: Comment: How to make scanpy read gene names to plot instead of read sequences
2.8 years ago by shome ▴ 10
2
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3
replies
1.8k
views
How to make scanpy read gene names to plot instead of read sequences
single-cell scanpy scRNA-seq
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 10
0
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0
replies
560
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Carrying out differential analysis for Abseq data
scRNAseq RNAseq Abseq expression Differential
2.8 years ago by shome ▴ 10
0
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1
reply
673
views
Bioinformatics method to find which genes have GC and TATA boxes ?
GCbox
updated 2.8 years ago by 45k • written 3.3 years ago by ▴ 10
0
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0
replies
1.9k
views
Comment: Comment: What is cut-off for significance in DE analysis in sc-RNA seq data
3.4 years ago by shome ▴ 10
3
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4
replies
1.9k
views
What is cut-off for significance in DE analysis in sc-RNA seq data
bulk expression differential single RNA-seq cell
updated 3.4 years ago by 89k • written 3.4 years ago by ▴ 10
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0
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1.1k
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Comment: Comment: How to find which DE genes fall under statistically significant criteria using s
3.4 years ago by shome ▴ 10
0
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1
reply
1.1k
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How to find which DE genes fall under statistically significant criteria using scanpy DEG analysis
RNA-seq expression cell single differential scanpy
3.4 years ago by shome ▴ 10
0
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0
replies
495
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How to obtain all gene details from each of the clusters formed in UMAP
scanpy Sc-RNA
3.6 years ago by shome ▴ 10
0
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1
reply
1.2k
views
Comment: Comment: How to analyse RNA-seq data stored over certain period of time
3.7 years ago by shome ▴ 10
1
vote
4
replies
1.2k
views
How to analyse RNA-seq data stored over certain period of time
RNA-seq bulk
updated 3.7 years ago by 13k • written 3.7 years ago by ▴ 10
0
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1
reply
896
views
Tools to detect the bacterial sequences from mouse RNA-seq data
single RNA-seq cell
updated 3.7 years ago by ▴ 340 • written 3.7 years ago by ▴ 10
2
votes
1
reply
2.2k
views
How to combine UMAP plots from multiple datasets
scanpy Seurat scRNAseq UMAP
updated 3.7 years ago by 13k • written 3.7 years ago by ▴ 10
1
vote
3
replies
1.7k
views
Finding ORFs from RNA-seq Sequence Data of eukaryotic species
nucleotide rna dna genome
updated 4.5 years ago by ★ 2.9k • written 4.5 years ago by ▴ 10
0
votes
1
reply
944
views
Improving Classification accuracy and precision of classifier
protein machinelearning CNN
updated 4.8 years ago by • 0 • written 4.8 years ago by ▴ 10
3
votes
2
replies
990
views
Any other way to validate RNA-seq data if qPCR tests is not available?
sequencing genome
updated 5.2 years ago by 89k • written 5.2 years ago by ▴ 10
1
vote
1
reply
801
views
Does DESeq2 can do hypothesis testing between multiple treatment groups or the tests just done between the genes ?
RNA-Seq
5.3 years ago by shome ▴ 10
0
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1
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2.7k
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Comment: C: combine fasta sequences in combination from two different files
5.6 years ago by shome ▴ 10
0
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1
reply
2.7k
views
Comment: C: combine fasta sequences in combination from two different files
5.6 years ago by shome ▴ 10
0
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1
reply
2.7k
views
Comment: C: combine fasta sequences in combination from two different files
5.6 years ago by shome ▴ 10
9
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12
replies
2.7k
views
combine fasta sequences in combination from two different files
unix fasta awk shell
updated 5.6 years ago by 166k • written 5.6 years ago by ▴ 10
0
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2
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2.7k
views
Comment: C: combine fasta sequences in combination from two different files
5.6 years ago by shome ▴ 10
0
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1
reply
2.7k
views
Comment: C: combine fasta sequences in combination from two different files
5.6 years ago by shome ▴ 10
0
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0
replies
1.8k
views
Comment: C: No output when trying to obtain protein sequence from PDB file
5.7 years ago by shome ▴ 10
0
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3
replies
1.8k
views
No output when trying to obtain protein sequence from PDB file
PDB biopython
updated 5.7 years ago by 154k • written 5.7 years ago by ▴ 10
0
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0
replies
1.1k
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol visualisation python pymol scripting
5.9 years ago by shome ▴ 10
0
votes
5
replies
3.4k
views
Downloading set of fasta sequences based on gene id
gene sequence geneid fasta
updated 6.4 years ago by ★ 3.9k • written 6.4 years ago by ▴ 10
0
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0
replies
3.4k
views
Comment: C: Downloading set of fasta sequences based on gene id
6.4 years ago by shome ▴ 10
0
votes
0
replies
3.4k
views
Comment: C: Downloading set of fasta sequences based on gene id
6.4 years ago by shome ▴ 10
0
votes
1
reply
993
views
Determining which strain trinity contig belongs to after denovoassembly
RNA-Seq assembly SNP
6.5 years ago by shome ▴ 10
1
vote
2
replies
1.7k
views
Meaning of alias in Sequence Read Archive
RNA-Seq ncbi
updated 9.6 years ago by 154k • written 9.6 years ago by ▴ 10
2
votes
1
reply
4.6k
views
How to find chromosome coordinates based on gene locus
gene ncbi genome locus
updated 3.2 years ago by 45k • written 9.7 years ago by ▴ 10
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