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Comment: C: why GATK and BCFTOOLS output different number of DP
4.0 years ago by bxia ▴ 180
1
vote
2
replies
882
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why GATK and BCFTOOLS output different number of DP
miseq SNP
4.0 years ago by bxia ▴ 180
0
votes
0
replies
652
views
How does bcftools estimate the probability for genotype for VAF 0.75 for diploid?
bcftools snps genotype
4.0 years ago by bxia ▴ 180
5
votes
12
replies
7.8k
views
bedGrapthToBigWig conversion, xxx is not found in chromosome files
ChIP-Seq
updated 4.2 years ago by ▴ 50 • written 7.9 years ago by ▴ 180
0
votes
1
reply
3.7k
views
ATCC Cell lines information, Database access
RNA-Seq
updated 5.1 years ago by ▴ 120 • written 7.2 years ago by ▴ 180
4
votes
4
replies
4.4k
views
Interpretation of TCGA clinical data
RNA-Seq
updated 5.4 years ago by 13k • written 7.8 years ago by ▴ 180
2
votes
2
replies
4.4k
views
Blast multiple sequences with Biopython qblast
blast
updated 5.8 years ago by ▴ 10 • written 7.0 years ago by ▴ 180
3
votes
5
replies
1.2k
views
How to know favorite and unfavorite for survival analysis programmly?
RNA-Seq
updated 5.9 years ago by ★ 4.0k • written 5.9 years ago by ▴ 180
0
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1
reply
1.2k
views
Comment: C: How to know favorite and unfavorite for survival analysis programmly?
5.9 years ago by bxia ▴ 180
0
votes
1
reply
887
views
edgeR 2GB table
RNA-Seq
5.9 years ago by bxia ▴ 180
0
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0
replies
3.3k
views
Comment: C: how to convert SGD standard name to SGD systematic ID?
6.1 years ago by bxia ▴ 180
4
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4
replies
3.3k
views
how to convert SGD standard name to SGD systematic ID?
SGD
6.1 years ago by bxia ▴ 180
0
votes
1
reply
1.4k
views
How does WGS normalization perform between samples
whole genome sequencing
6.1 years ago by bxia ▴ 180
0
votes
0
replies
2.3k
views
Comment: C: LUMPY SV call without quality score
6.1 years ago by bxia ▴ 180
0
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1
reply
2.3k
views
Comment: C: LUMPY SV call without quality score
6.1 years ago by bxia ▴ 180
0
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1
reply
2.3k
views
Comment: C: LUMPY SV call without quality score
6.1 years ago by bxia ▴ 180
0
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6
replies
2.3k
views
LUMPY SV call without quality score
WGS
6.1 years ago by bxia ▴ 180
6
votes
18
replies
8.7k
views
9 follow
FastQC stuck at 95% read sequences forever
RNA-Seq
updated 6.1 years ago by ▴ 20 • written 7.9 years ago by ▴ 180
0
votes
2
replies
1.2k
views
cpath is not available for cytoscape?
protein interaction
updated 6.2 years ago by ▴ 350 • written 6.2 years ago by ▴ 180
12
votes
10
replies
4.5k
views
How Gro-seq identify enhancer RNA?
RNA-Seq
updated 6.4 years ago by 8.9k • written 6.4 years ago by ▴ 180
0
votes
1
reply
4.5k
views
Comment: C: How Gro-seq identify enhancer RNA?
6.4 years ago by bxia ▴ 180
0
votes
1
reply
1.5k
views
Could I map strand specific RNA-seq with non-strand specific?
RNA-Seq
updated 6.6 years ago by ★ 2.2k • written 6.6 years ago by ▴ 180
4
votes
9
replies
11k
views
fastq-dump timeout exhausted error
sra
updated 21 months ago by • 0 • written 7.0 years ago by ▴ 180
1
vote
1
reply
1.6k
views
What is the difference between hg19 v9 vs hg19
RNA-Seq
updated 6.6 years ago by ★ 5.2k • written 6.6 years ago by ▴ 180
1
vote
0
replies
874
views
how do I know there is alternative transcript switch in RNA-seq
RNA-Seq
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 180
6
votes
7
replies
10.0k
views
how do I know the breast cancer subtype based on TCGA clinical data
RNA-Seq
updated 6.9 years ago by ▴ 40 • written 7.8 years ago by ▴ 180
0
votes
2
replies
3.2k
views
Comment: C: How to know a RNA-seq is polyA or total-RNA-seq in GEO?
6.9 years ago by bxia ▴ 180
9
votes
6
replies
3.2k
views
How to know a RNA-seq is polyA or total-RNA-seq in GEO?
GEO RNA-Seq
updated 6.9 years ago by 104k • written 6.9 years ago by ▴ 180
0
votes
1
reply
2.7k
views
Comment: C: bed format, START always bigger than END, no matter which strand?
6.9 years ago by bxia ▴ 180
2
votes
5
replies
2.7k
views
bed format, START always bigger than END, no matter which strand?
bed bowtie
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 180
0
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0
replies
2.7k
views
Comment: C: bed format, START always bigger than END, no matter which strand?
6.9 years ago by bxia ▴ 180
0
votes
0
replies
1.0k
views
Comment: C: Encode http 403 error, I am being blocked?
7.0 years ago by bxia ▴ 180
1
vote
3
replies
1.0k
views
Encode http 403 error, I am being blocked?
RNA-Seq
7.0 years ago by bxia ▴ 180
0
votes
0
replies
11k
views
Comment: C: fastq-dump timeout exhausted error
7.0 years ago by bxia ▴ 180
0
votes
1
reply
11k
views
Comment: C: fastq-dump timeout exhausted error
7.0 years ago by bxia ▴ 180
0
votes
1
reply
1.4k
views
paired sample in ENCODE RNA-seq and ChIP-seq
encode
7.0 years ago by bxia ▴ 180
0
votes
1
reply
1.4k
views
Is there a function similar with qblast to blast the SeqIO.parse object? Biopython Blastn
blast
7.0 years ago by bxia ▴ 180
0
votes
3
replies
1.3k
views
HTseq report 80% of reads no feature
RNA-Seq
updated 7.0 years ago by 104k • written 7.0 years ago by ▴ 180
0
votes
0
replies
1.3k
views
Comment: C: Is there a way that I can perform blast through NCBI from my program?
7.0 years ago by bxia ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: Is there a way that I can perform blast through NCBI from my program?
7.1 years ago by bxia ▴ 180
3
votes
4
replies
1.3k
views
Is there a way that I can perform blast through NCBI from my program?
blast
updated 7.1 years ago by 161k • written 7.1 years ago by ▴ 180
0
votes
1
reply
1.7k
views
submission template for Bioinformatics
article
7.1 years ago by bxia ▴ 180
1
vote
1
reply
2.1k
views
Does MACS2 or MACS14 perform total reads normalization?
ChIP-Seq
updated 7.1 years ago by 20 • written 7.1 years ago by ▴ 180
0
votes
0
replies
1.2k
views
Comment: C: bowtie no reported alignment?
7.1 years ago by bxia ▴ 180
0
votes
2
replies
1.2k
views
bowtie no reported alignment?
ChIP-Seq
7.1 years ago by bxia ▴ 180
0
votes
0
replies
1.1k
views
Comment: C: Do I need to only keep exon in gene GTF when I run Cuffdiff?
7.2 years ago by bxia ▴ 180
0
votes
2
replies
1.1k
views
Do I need to only keep exon in gene GTF when I run Cuffdiff?
RNA-Seq
updated 7.2 years ago by ★ 2.8k • written 7.2 years ago by ▴ 180
9
votes
17
replies
7.0k
views
8 follow
The most popular Alternative to David?
RNA-Seq
updated 7.2 years ago by ▴ 140 • written 7.2 years ago by ▴ 180
0
votes
1
reply
7.0k
views
Comment: C: The most popular Alternative to David?
updated 7.2 years ago by 141k • written 7.2 years ago by ▴ 180
0
votes
1
reply
7.0k
views
Comment: C: The most popular Alternative to David?
7.2 years ago by bxia ▴ 180
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