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203
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issue with merging single cell data files
scRNAseq
updated 13 days ago by ▴ 120 • written 13 days ago by ▴ 220
0
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1
reply
405
views
Comment: Comment: how to find the Allele Number of specific variant from gnomAD
7 months ago by Sara ▴ 220
1
vote
3
replies
405
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 7 months ago by 153k • written 7 months ago by ▴ 220
0
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0
replies
198
views
no read counts per allele while using gatk ASEReadCounter
GATK
9 months ago by Sara ▴ 220
0
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0
replies
503
views
Comment: Comment: Unable to access error while running docker container for GATK
9 months ago by Sara ▴ 220
0
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1
reply
503
views
Comment: Comment: Unable to access error while running docker container for GATK
9 months ago by Sara ▴ 220
2
votes
4
replies
503
views
Unable to access error while running docker container for GATK
gatk docker
9 months ago by Sara ▴ 220
0
votes
3
replies
489
views
Getting fastq files as the output of bowtie2
bowtie2
updated 10 months ago by 21k • written 10 months ago by ▴ 220
3
votes
6
replies
819
views
downloading human rRNA.fasta
rRNA
updated 10 months ago by 70k • written 10 months ago by ▴ 220
0
votes
0
replies
202
views
make sashimi plot on the IGV using cram file
sashimi plot
10 months ago by Sara ▴ 220
4
votes
3
replies
945
views
determine sex ratio from the bam file
bam
updated 10 months ago by ▴ 30 • written 10 months ago by ▴ 220
3
votes
2
replies
299
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 10 months ago by 70k • written 10 months ago by ▴ 220
0
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2
replies
270
views
download sequencing data from public domain
fastq
updated 10 months ago by ▴ 220 • written 10 months ago by ▴ 220
0
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0
replies
651
views
Comment: Comment: weird alignment results for RNAseq data
11 months ago by Sara ▴ 220
0
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1
reply
651
views
Comment: Comment: weird alignment results for RNAseq data
11 months ago by Sara ▴ 220
0
votes
2
replies
651
views
Comment: Comment: weird alignment results for RNAseq data
11 months ago by Sara ▴ 220
0
votes
1
reply
651
views
Comment: Comment: weird alignment results for RNAseq data
11 months ago by Sara ▴ 220
1
vote
12
replies
651
views
weird alignment results for RNAseq data
hisat2 star
updated 11 months ago by 21k • written 11 months ago by ▴ 220
2
votes
2
replies
407
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 11 months ago by 21k • written 11 months ago by ▴ 220
2
votes
2
replies
349
views
monoallelic expression analysis
expression monoallelic analysis
updated 11 months ago by ★ 3.0k • written 11 months ago by ▴ 220
1
vote
1
reply
225
views
filtering out 0/0 calls from VCF file
VCF
updated 11 months ago by 153k • written 11 months ago by ▴ 220
4
votes
4
replies
381
views
VCF file comparison and plotting them
vcf
updated 11 months ago by 153k • written 11 months ago by ▴ 220
0
votes
2
replies
1.1k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 13 months ago by 13k • written 13 months ago by ▴ 220
1
vote
1
reply
440
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 14 months ago by ▴ 980 • written 14 months ago by ▴ 220
3
votes
3
replies
644
views
novel AS events detection from RNA seq
Splicing Alternative
updated 14 months ago by ▴ 10 • written 14 months ago by ▴ 220
3
votes
4
replies
559
views
correct fastq files for the expression analysis
cram
updated 14 months ago by 21k • written 14 months ago by ▴ 220
0
votes
2
replies
815
views
Comment: Comment: Problem when generating hg38 genome indexes using STAR
14 months ago by Sara ▴ 220
0
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2
replies
815
views
Comment: Comment: Problem when generating hg38 genome indexes using STAR
14 months ago by Sara ▴ 220
0
votes
6
replies
815
views
Problem when generating hg38 genome indexes using STAR
STAR
updated 14 months ago by 70k • written 14 months ago by ▴ 220
0
votes
1
reply
1.1k
views
Comment: Comment: error when indexing transcroptome using salmon
15 months ago by Sara ▴ 220
0
votes
1
reply
1.1k
views
Comment: Comment: error when indexing transcroptome using salmon
15 months ago by Sara ▴ 220
0
votes
1
reply
1.1k
views
Comment: Comment: error when indexing transcroptome using salmon
15 months ago by Sara ▴ 220
3
votes
8
replies
1.1k
views
error when indexing transcroptome using salmon
Transcriptome salmon
updated 15 months ago by 5.9k • written 15 months ago by ▴ 220
0
votes
0
replies
226
views
detect the alternative contigs from the RNAseq data
alternative contigs
16 months ago by Sara ▴ 220
0
votes
1
reply
712
views
Comment: Comment: obtaining unique identifier for a sample from fastq files
17 months ago by Sara ▴ 220
0
votes
4
replies
712
views
obtaining unique identifier for a sample from fastq files
fastq
17 months ago by Sara ▴ 220
1
vote
1
reply
405
views
extract specific information from fastq and sam files
sequencing
updated 17 months ago by 126k • written 17 months ago by ▴ 220
4
votes
2
replies
647
views
DNA to peptide translation and adding to csv file
translation
updated 17 months ago by 153k • written 17 months ago by ▴ 220
3
votes
3
replies
458
views
best tool for the pipeline wrapper
pipeline
updated 18 months ago by 96k • written 18 months ago by ▴ 220
0
votes
0
replies
1.2k
views
Comment: Comment: collapsing pacbio reads into a single sequence
19 months ago by Sara ▴ 220
0
votes
1
reply
1.2k
views
Comment: Comment: collapsing pacbio reads into a single sequence
19 months ago by Sara ▴ 220
2
votes
5
replies
1.2k
views
collapsing pacbio reads into a single sequence
pacbio
19 months ago by Sara ▴ 220
2
votes
2
replies
743
views
Available annotation file for the PacBio Iso-seq data
sequencing
updated 21 months ago by 126k • written 3.2 years ago by ▴ 220
3
votes
3
replies
732
views
quick way of contamination identification from fastq file
alignment
updated 21 months ago by ★ 1.2k • written 21 months ago by ▴ 220
0
votes
1
reply
846
views
Comment: Comment: problem with SNPs and Indels detectiong useng WGS data
23 months ago by Sara ▴ 220
1
vote
4
replies
846
views
problem with SNPs and Indels detectiong useng WGS data
WGS
updated 23 months ago by 38k • written 23 months ago by ▴ 220
0
votes
0
replies
385
views
Comment: Comment: low alignment rate of methyl-seq data
2.1 years ago by Sara ▴ 220
1
vote
2
replies
385
views
low alignment rate of methyl-seq data
alignment
2.1 years ago by Sara ▴ 220
0
votes
0
replies
401
views
methylseq data analysis using bismark and low alignment rate
next-gen
2.2 years ago by Sara ▴ 220
4
votes
6
replies
1.4k
views
UMI and the reason of high duplicate rate
rna-seq
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 220
123 results • Page 1 of 3
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