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0
votes
1
reply
208
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq Seurat
updated 11 days ago by 40k • written 12 days ago by ▴ 230
0
votes
2
replies
336
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 13 days ago by ▴ 80 • written 14 days ago by ▴ 230
5
votes
9
replies
549
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE RNAseq
updated 10 weeks ago by 17k • written 10 weeks ago by ▴ 230
0
votes
1
reply
549
views
Comment: Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
10 weeks ago by Sara ▴ 230
0
votes
1
reply
549
views
Comment: Comment: loosing many genes while doing DGE on the RNAseq data due to read count threshol
10 weeks ago by Sara ▴ 230
0
votes
1
reply
339
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 3 months ago by 3.7k • written 3 months ago by ▴ 230
0
votes
1
reply
240
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 3 months ago by 134k • written 3 months ago by ▴ 230
2
votes
3
replies
586
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 3 months ago by 40k • written 3 months ago by ▴ 230
1
vote
1
reply
257
views
making metadata file for differential gene expression analysis
RNAseq
updated 4 months ago by ★ 1.7k • written 4 months ago by ▴ 230
0
votes
0
replies
477
views
Comment: Comment: modelling time series data from different individuals
4 months ago by Sara ▴ 230
0
votes
2
replies
477
views
modelling time series data from different individuals
modeling
4 months ago by Sara ▴ 230
0
votes
1
reply
434
views
issue with merging single cell data files
scRNAseq
updated 6 months ago by ▴ 130 • written 6 months ago by ▴ 230
0
votes
1
reply
537
views
Comment: Comment: how to find the Allele Number of specific variant from gnomAD
14 months ago by Sara ▴ 230
1
vote
3
replies
537
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 14 months ago by 157k • written 14 months ago by ▴ 230
0
votes
0
replies
286
views
no read counts per allele while using gatk ASEReadCounter
GATK
16 months ago by Sara ▴ 230
0
votes
0
replies
662
views
Comment: Comment: Unable to access error while running docker container for GATK
16 months ago by Sara ▴ 230
0
votes
1
reply
662
views
Comment: Comment: Unable to access error while running docker container for GATK
16 months ago by Sara ▴ 230
2
votes
4
replies
662
views
Unable to access error while running docker container for GATK
gatk docker
16 months ago by Sara ▴ 230
0
votes
3
replies
703
views
Getting fastq files as the output of bowtie2
bowtie2
updated 16 months ago by 21k • written 16 months ago by ▴ 230
3
votes
6
replies
1.4k
views
downloading human rRNA.fasta
rRNA
updated 16 months ago by 77k • written 16 months ago by ▴ 230
0
votes
0
replies
269
views
make sashimi plot on the IGV using cram file
sashimi plot
16 months ago by Sara ▴ 230
4
votes
3
replies
1.5k
views
determine sex ratio from the bam file
bam
updated 17 months ago by ▴ 30 • written 17 months ago by ▴ 230
4
votes
2
replies
420
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 17 months ago by 77k • written 17 months ago by ▴ 230
0
votes
2
replies
371
views
download sequencing data from public domain
fastq
updated 17 months ago by ▴ 220 • written 17 months ago by ▴ 230
0
votes
0
replies
943
views
Comment: Comment: weird alignment results for RNAseq data
17 months ago by Sara ▴ 230
0
votes
1
reply
943
views
Comment: Comment: weird alignment results for RNAseq data
17 months ago by Sara ▴ 230
0
votes
2
replies
943
views
Comment: Comment: weird alignment results for RNAseq data
17 months ago by Sara ▴ 230
0
votes
1
reply
943
views
Comment: Comment: weird alignment results for RNAseq data
17 months ago by Sara ▴ 230
1
vote
12
replies
943
views
weird alignment results for RNAseq data
hisat2 star
updated 17 months ago by 21k • written 17 months ago by ▴ 230
2
votes
2
replies
583
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 17 months ago by 21k • written 17 months ago by ▴ 230
2
votes
2
replies
460
views
monoallelic expression analysis
expression monoallelic analysis
updated 17 months ago by ★ 3.0k • written 17 months ago by ▴ 230
1
vote
1
reply
293
views
filtering out 0/0 calls from VCF file
VCF
updated 18 months ago by 157k • written 18 months ago by ▴ 230
4
votes
4
replies
551
views
VCF file comparison and plotting them
vcf
updated 18 months ago by 157k • written 18 months ago by ▴ 230
0
votes
2
replies
1.3k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 20 months ago by 13k • written 20 months ago by ▴ 230
1
vote
1
reply
624
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 21 months ago by ★ 1.2k • written 21 months ago by ▴ 230
3
votes
3
replies
867
views
novel AS events detection from RNA seq
Splicing Alternative
updated 20 months ago by ▴ 10 • written 21 months ago by ▴ 230
3
votes
4
replies
706
views
correct fastq files for the expression analysis
cram
updated 21 months ago by 21k • written 21 months ago by ▴ 230
0
votes
2
replies
1.1k
views
Comment: Comment: Problem when generating hg38 genome indexes using STAR
21 months ago by Sara ▴ 230
0
votes
2
replies
1.1k
views
Comment: Comment: Problem when generating hg38 genome indexes using STAR
21 months ago by Sara ▴ 230
0
votes
6
replies
1.1k
views
Problem when generating hg38 genome indexes using STAR
STAR
updated 21 months ago by 77k • written 21 months ago by ▴ 230
0
votes
1
reply
1.6k
views
Comment: Comment: error when indexing transcroptome using salmon
21 months ago by Sara ▴ 230
0
votes
1
reply
1.6k
views
Comment: Comment: error when indexing transcroptome using salmon
21 months ago by Sara ▴ 230
0
votes
1
reply
1.6k
views
Comment: Comment: error when indexing transcroptome using salmon
21 months ago by Sara ▴ 230
3
votes
8
replies
1.6k
views
error when indexing transcroptome using salmon
Transcriptome salmon
updated 21 months ago by 6.2k • written 21 months ago by ▴ 230
0
votes
0
replies
293
views
detect the alternative contigs from the RNAseq data
alternative contigs
22 months ago by Sara ▴ 230
0
votes
1
reply
969
views
Comment: Comment: obtaining unique identifier for a sample from fastq files
23 months ago by Sara ▴ 230
0
votes
4
replies
969
views
obtaining unique identifier for a sample from fastq files
fastq
23 months ago by Sara ▴ 230
1
vote
1
reply
503
views
extract specific information from fastq and sam files
sequencing
updated 23 months ago by 134k • written 23 months ago by ▴ 230
4
votes
2
replies
805
views
DNA to peptide translation and adding to csv file
translation
updated 2.0 years ago by 157k • written 2.0 years ago by ▴ 230
3
votes
3
replies
569
views
best tool for the pipeline wrapper
pipeline
updated 2.1 years ago by 98k • written 2.1 years ago by ▴ 230
134 results • Page 1 of 3
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