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1
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1
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1.6k
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getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scRNAseq
18 months ago by Sara ▴ 280
1
vote
1
reply
563
views
biological replicate in STAR command
RNAseq
updated 19 months ago by 15k • written 19 months ago by ▴ 280
1
vote
1
reply
479
views
filtering gene sets when performing scRNAseq data analysis
scRNA-seq
updated 20 months ago by 45k • written 20 months ago by ▴ 280
2
votes
5
replies
1.5k
views
batch effect correction in 10x genomics single cell sequencing
scRNA-seq
updated 20 months ago by ▴ 80 • written 20 months ago by ▴ 280
2
votes
1
reply
1.0k
views
Condition specific marker detection and problem with the distribution of cells from different samples
scRNAseq
20 months ago by Sara ▴ 280
0
votes
0
replies
1.1k
views
Comment: Comment: labelling the clusters from the CD4 T cell scRNAseq data
22 months ago by Sara ▴ 280
1
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3
replies
1.1k
views
labelling the clusters from the CD4 T cell scRNAseq data
scRNAseq
22 months ago by Sara ▴ 280
0
votes
2
replies
899
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 22 months ago by 89k • written 22 months ago by ▴ 280
4
votes
2
replies
7.6k
views
keep getting error while trying to convert Seurat object into a H5ad file
scRNA-seq Seurat
updated 20 months ago by 45k • written 22 months ago by ▴ 280
0
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1
reply
1.6k
views
convert matrix files from 10X (single cell) to h5 file
scRNA-seq
updated 22 months ago by ★ 3.1k • written 22 months ago by ▴ 280
2
votes
1
reply
760
views
zero counts for all genes in RNAseq data of Ferret
RNA-seq DGE
updated 22 months ago by 45k • written 22 months ago by ▴ 280
0
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1
reply
966
views
Comment: Comment: Correct for different number of cells and individuals in single cell data analys
22 months ago by Sara ▴ 280
0
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3
replies
966
views
Correct for different number of cells and individuals in single cell data analysis
scRNA-seq
updated 22 months ago by 45k • written 22 months ago by ▴ 280
3
votes
1
reply
1.5k
views
Add samples IDs to Seurat object when integrating different samples to do differential expression analysis
scRNA-seq Seurat
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 280
1
vote
2
replies
2.1k
views
differential gene expression analysis comparing different conditions using scRNAseq
scRNAseq
updated 2.0 years ago by ▴ 120 • written 2.0 years ago by ▴ 280
5
votes
9
replies
2.9k
views
losing many genes while doing DGE on the RNAseq data due to read count threshold
DGE RNAseq
updated 2.2 years ago by 22k • written 2.2 years ago by ▴ 280
0
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1
reply
2.9k
views
Comment: Comment: losing many genes while doing DGE on the RNAseq data due to read count threshold
2.2 years ago by Sara ▴ 280
0
votes
1
reply
2.9k
views
Comment: Comment: loosing many genes while doing DGE on the RNAseq data due to read count threshol
2.2 years ago by Sara ▴ 280
0
votes
1
reply
789
views
including incomplete data set in the PCA & gene expression analysis
RNA-seq
updated 2.2 years ago by 4.8k • written 2.2 years ago by ▴ 280
0
votes
1
reply
968
views
demultiplex bcl files from 10X genomics and generate fastq file for each sample separately
scRNAseq
updated 2.3 years ago by 153k • written 2.3 years ago by ▴ 280
2
votes
3
replies
2.5k
views
counts matrix should be numeric, currently it has mode: character when using a csv file in R for DESeq2
DESeq2
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 280
1
vote
1
reply
796
views
making metadata file for differential gene expression analysis
RNAseq
updated 2.3 years ago by ★ 2.1k • written 2.3 years ago by ▴ 280
0
votes
0
replies
1.3k
views
Comment: Comment: modelling time series data from different individuals
2.3 years ago by Sara ▴ 280
0
votes
2
replies
1.3k
views
modelling time series data from different individuals
modeling
2.3 years ago by Sara ▴ 280
0
votes
1
reply
1.3k
views
issue with merging single cell data files
scRNAseq
updated 2.5 years ago by ▴ 170 • written 2.5 years ago by ▴ 280
0
votes
1
reply
1.1k
views
Comment: Comment: how to find the Allele Number of specific variant from gnomAD
3.1 years ago by Sara ▴ 280
1
vote
3
replies
1.1k
views
how to find the Allele Number of specific variant from gnomAD
gnomAD
updated 3.1 years ago by 166k • written 3.1 years ago by ▴ 280
0
votes
0
replies
620
views
no read counts per allele while using gatk ASEReadCounter
GATK
3.3 years ago by Sara ▴ 280
0
votes
0
replies
1.5k
views
Comment: Comment: Unable to access error while running docker container for GATK
3.3 years ago by Sara ▴ 280
0
votes
1
reply
1.5k
views
Comment: Comment: Unable to access error while running docker container for GATK
3.3 years ago by Sara ▴ 280
2
votes
4
replies
1.5k
views
Unable to access error while running docker container for GATK
gatk docker
3.3 years ago by Sara ▴ 280
1
vote
3
replies
1.7k
views
Getting fastq files as the output of bowtie2
bowtie2
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 280
5
votes
7
replies
5.1k
views
downloading human rRNA.fasta
rRNA
updated 21 months ago by ▴ 10 • written 3.3 years ago by ▴ 280
0
votes
0
replies
594
views
make sashimi plot on the IGV using cram file
sashimi plot
3.4 years ago by Sara ▴ 280
5
votes
3
replies
3.7k
views
determine sex ratio from the bam file
bam
updated 3.4 years ago by ▴ 30 • written 3.4 years ago by ▴ 280
4
votes
2
replies
1.0k
views
Detection of single nucleotide insertion within a tandem repeat region of variable length (VNTR) using WES data
WES
updated 3.4 years ago by 89k • written 3.4 years ago by ▴ 280
0
votes
2
replies
851
views
download sequencing data from public domain
fastq
updated 3.4 years ago by ▴ 260 • written 3.4 years ago by ▴ 280
0
votes
0
replies
2.4k
views
Comment: Comment: weird alignment results for RNAseq data
3.4 years ago by Sara ▴ 280
0
votes
1
reply
2.4k
views
Comment: Comment: weird alignment results for RNAseq data
3.4 years ago by Sara ▴ 280
0
votes
2
replies
2.4k
views
Comment: Comment: weird alignment results for RNAseq data
3.4 years ago by Sara ▴ 280
0
votes
1
reply
2.4k
views
Comment: Comment: weird alignment results for RNAseq data
3.4 years ago by Sara ▴ 280
1
vote
12
replies
2.4k
views
weird alignment results for RNAseq data
hisat2 star
updated 3.4 years ago by 21k • written 3.4 years ago by ▴ 280
2
votes
2
replies
1.5k
views
huge difference when comparing 2 vcf files from the same sample
VCF
updated 3.4 years ago by 23k • written 3.4 years ago by ▴ 280
2
votes
2
replies
1.0k
views
monoallelic expression analysis
expression monoallelic analysis
updated 3.4 years ago by ★ 3.0k • written 3.4 years ago by ▴ 280
2
votes
1
reply
691
views
filtering out 0/0 calls from VCF file
VCF
updated 3.5 years ago by 166k • written 3.5 years ago by ▴ 280
4
votes
4
replies
1.2k
views
VCF file comparison and plotting them
vcf
updated 3.5 years ago by 166k • written 3.5 years ago by ▴ 280
0
votes
2
replies
1.9k
views
create index for genome instead of transcriptome using Salmon
salmon
updated 3.7 years ago by 15k • written 3.7 years ago by ▴ 280
1
vote
1
reply
1.3k
views
weird error while running rmats on fastq files using hg38 genome
rmats
updated 3.7 years ago by ★ 1.9k • written 3.7 years ago by ▴ 280
4
votes
3
replies
1.8k
views
novel AS events detection from RNA seq
Splicing Alternative
updated 3.7 years ago by ▴ 10 • written 3.7 years ago by ▴ 280
3
votes
4
replies
1.4k
views
correct fastq files for the expression analysis
cram
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 280
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