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questions
1
vote
1
reply
902
views
What reference to be used in snippy
snippy
SNP
updated 2.2 years ago by
Kausik
▴ 40 • written 3.3 years ago by
Optimist
▴ 180
4
votes
5
replies
3.3k
views
Replace fasta Header witha a matching text
awk
seqkit
grep
updated 3.1 years ago by
GenoMax
141k • written 3.1 years ago by
Optimist
▴ 180
0
votes
0
replies
729
views
Combine multiple CARD RGI outputs
CARD
RGI
3.2 years ago by
Optimist
▴ 180
7
votes
12
replies
2.4k
views
How to extract fasta headers that contains specific text and it's sequence
barrnap
16srRNA
fasta
written 3.2 years ago by
Optimist
▴ 180
3
votes
5
replies
1.1k
views
What is the best way to assemble Illumina paired end reads?
Illumina
sequencing
Assembly
3.3 years ago by
Optimist
▴ 180
2
votes
0
replies
526
views
Characterization of an Integron carrying antimicrobial resistance genes
integron
Genomic Island
Transposon
updated 3.0 years ago by
BacPathomics
• 0 • written 3.4 years ago by
Optimist
▴ 180
0
votes
1
reply
720
views
Should we remove plasmid sequences for Whole genome Alignment
plasmids
genome alignment
3.4 years ago by
Optimist
▴ 180
5
votes
6
replies
4.2k
views
Prokka Annotation or NCBI Annotation
Prokka
NCBI
GenBank
updated 2.5 years ago by
Emilie-Martine Sixhøj Jepsen
• 0 • written 3.4 years ago by
Optimist
▴ 180
0
votes
0
replies
756
views
Tools for Whole genome phylogeny
Phyogeny
Bacterial Genomics
3.5 years ago by
Optimist
▴ 180
1
vote
2
replies
643
views
extract a DNA sequence based on header in multifasta file
fasta
sequence extraction
updated 3.5 years ago by
shenwei356
8.4k • written 3.5 years ago by
Optimist
▴ 180
0
votes
1
reply
949
views
How to generate WGS Multiple sequence alignment file
Multiple-Sequence-Alignment
updated 11 months ago by
Ram
43k • written 3.5 years ago by
Optimist
▴ 180
6
votes
4
replies
1.8k
views
How to download all Pseudomonas aeruginosa Genomes from NCBI Genomes database?
NCBI
Genome-Assembly
updated 13 months ago by
Ram
43k • written 3.5 years ago by
Optimist
▴ 180
0
votes
0
replies
1.1k
views
Error creating a new environment in Bioconda
Bioconda
3.5 years ago by
Optimist
▴ 180
1
vote
1
reply
892
views
Error install Phame using Bioconda
conda
Phame
Install
3.5 years ago by
Optimist
▴ 180
0
votes
1
reply
1.0k
views
Should we Ignore heterozygous SNPs while constructing SNP based phylogeny
SNP
Phylogeny
CSIPhylogent
updated 3.5 years ago by
Biostar
20 • written 3.6 years ago by
Optimist
▴ 180
3
votes
2
replies
1.2k
views
Hybrid Assembly From Illumina and Ion Torrent Reads
Iontorrent
Illumina
Genome assembly
updated 3.6 years ago by
hugo.avila
▴ 490 • written 3.6 years ago by
Optimist
▴ 180
6
votes
8
replies
5.9k
views
SNP Analysis of bacterial genomes
SNP
Genomics
Bacteria
updated 3.8 years ago by
Biostar
20 • written 6.4 years ago by
Optimist
▴ 180
2
votes
6
replies
1.0k
views
What tool should I use for the identification of DNA transposons?
transposons
bacterial
genome
transposase
updated 4.0 years ago by
lakhujanivijay
5.8k • written 4.0 years ago by
Optimist
▴ 180
2
votes
6
replies
1.0k
views
Tools to generate Genetic Context in Bacterial Genomes
synteny
plot
genomic context
updated 4.3 years ago by
Joe
21k • written 4.4 years ago by
Optimist
▴ 180
4
votes
4
replies
1.3k
views
High CDS Count in my assembled Genome using Nanopore reads (ONT) data
High CDS
WGS
Nanopore
Assembly
updated 4.7 years ago by
h.mon
35k • written 4.7 years ago by
Optimist
▴ 180
6
votes
4
replies
1.2k
views
Download All The Bacterial Genomes of Pseudomonas aeruginosa From Ncbi
wgs
ngs
bacterial Genomics
updated 4.9 years ago by
Joe
21k • written 4.9 years ago by
Optimist
▴ 180
3
votes
1
reply
690
views
Country wise list of bacterial genome sequences
Bacterial genome
wgs
ngs
updated 4.9 years ago by
GenoMax
141k • written 4.9 years ago by
Optimist
▴ 180
0
votes
1
reply
1.3k
views
SPAdes usge commandline
Assembly
genome
ion torrent
5.2 years ago by
Optimist
▴ 180
2
votes
1
reply
1.6k
views
Has anyone used MeDuSa: a multi-draft based scaffolder
wgs
Bacterial genomics
ngs
medusa
updated 5.2 years ago by
h.mon
35k • written 5.2 years ago by
Optimist
▴ 180
3
votes
3
replies
1.2k
views
Is there a way to segregate Plasmid contigs from Iontorrent WGS data?
Assembly
Plasmid
WGS
Ion torrent
updated 5.2 years ago by
5heikki
11k • written 5.2 years ago by
Optimist
▴ 180
1
vote
4
replies
4.0k
views
How to generate Protein Table file ( .ptt ) and RNA table file ( .rnt ) from a nucleotide fasta file?
Assembly
ngs
fasta
ptt
rnt
5.7 years ago by
Optimist
▴ 180
0
votes
1
reply
1.8k
views
Pictorial representation of gene cassettes
data representation
genomes
gene cassettes
6.3 years ago by
Optimist
▴ 180
2
votes
6
replies
2.1k
views
Determining a complete genome from contigs
contigs
complete genome
updated 6.4 years ago by
ropolocan
▴ 810 • written 6.5 years ago by
Optimist
▴ 180
0
votes
3
replies
1.4k
views
how can I search for Attachment sites in my bacterial genome
att
ICE
HGT
MDR
bacteria
updated 6.6 years ago by
baroyahya
• 0 • written 6.7 years ago by
Optimist
▴ 180
0
votes
0
replies
1.7k
views
how to detect the presence of Integrative and conjugative elements in bacterial genome.
Genomics
updated 11 months ago by
Ram
43k • written 6.6 years ago by
Optimist
▴ 180
1
vote
5
replies
3.6k
views
6 follow
Average Nucleotide Identity Calculation among bacterial genomes
ANI
Bacterial genomics
genome
sequence
updated 6.7 years ago by
SciLand
▴ 10 • written 6.7 years ago by
Optimist
▴ 180
2
votes
2
replies
2.4k
views
Finding of origin of replication in a bacterial Genome
WGS
NGS
oriT
Bacterial-genomics
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Optimist
▴ 180
8
votes
3
replies
2.2k
views
Can 167 contigs in my genome be stitched in to one fasta sequence
Genome
Contigs
fasta
updated 11 months ago by
Ram
43k • written 6.7 years ago by
Optimist
▴ 180
0
votes
0
replies
1.3k
views
Detection of Integrative and Conjugative Elements in a Bacterial Genome
Bacterial-Genomics
ICEs
updated 16 months ago by
Ram
43k • written 6.7 years ago by
Optimist
▴ 180
2
votes
1
reply
1.3k
views
Protein Sequence charecterization using pBLAST
PBLAST
Genomics
Bacterial-genomics
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Optimist
▴ 180
0
votes
0
replies
1.7k
views
Multiple Sequence Alignment of Bacterial Genomes
Bacterial Genomics
Multiple
sequence
alignment
6.8 years ago by
Optimist
▴ 180
36 results • Page
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