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0
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reply
542
views
Which fasta files are assembled transcripts IDBA_tran assembler ?
RNA-Seq Assembly
updated 4 weeks ago by • 0 • written 3.9 years ago by ▴ 980
3
votes
2
replies
836
views
How to download Time Calibration Data for Phylogenetic tree estimation ?
gene DNA RNA
updated 8 months ago by ▴ 30 • written 3.0 years ago by ▴ 980
0
votes
0
replies
365
views
How do I filter the annotated genome ?
protein genome gene
15 months ago by sunnykevin97 ▴ 980
0
votes
0
replies
710
views
How to generate Kimura substitution level plots for TE (transposable elements) ?
gene genome protein
19 months ago by sunnykevin97 ▴ 980
0
votes
1
reply
449
views
D-loop in mitogenomes?
gene genome protein
18 months ago by sunnykevin97 ▴ 980
0
votes
1
reply
497
views
Tools for finding the duplications in genomes for phylogenomics study ?
gene genome protein
updated 21 months ago by • 0 • written 21 months ago by ▴ 980
1
vote
3
replies
813
views
Duplication genes in Mitochondrial genome ?
gene genome protein
18 months ago by sunnykevin97 ▴ 980
8
votes
1
reply
669
views
Visualization tools for viewing the genes orientation in the mitogenomes
gene genome protein
updated 21 months ago by ★ 1.2k • written 21 months ago by ▴ 980
7
votes
4
replies
2.1k
views
Error: missing values and NaN's not allowed if 'na.rm' is FALSE
Genome Software
21 months ago by sunnykevin97 ▴ 980
11
votes
3
replies
636
views
parsing the output in to a table format ?
gene aw genome protein
updated 21 months ago by 4.6k • written 21 months ago by ▴ 980
0
votes
1
reply
551
views
Tools for functional annotation of nucleotide and amino acid sequences ?
gene genome protein
updated 21 months ago by ▴ 30 • written 22 months ago by ▴ 980
2
votes
2
replies
706
views
Parsing the codeml output in nice format?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
0
votes
0
replies
454
views
Running Paml (CODEML) on batch mode ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
0
votes
6
replies
1.0k
views
Translation table for annotating fish genomes ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
0
votes
0
replies
381
views
How to choose the substitution models for each partition ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
8
votes
7
replies
1.1k
views
How to extract fasta subsequences from a multiline fasta file which has very long headers ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
0
votes
0
replies
316
views
How to extract the CDS from a fasta file using the protein IDS ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
4
votes
4
replies
746
views
Why less Orthologs - can give enough information ?
gene genome protein
22 months ago by sunnykevin97 ▴ 980
3
votes
2
replies
735
views
Mauve - bacterial genome viewer?
Genome Software
22 months ago by sunnykevin97 ▴ 980
9
votes
2
replies
561
views
Repeat Masking step is really important on Low coverage genomes (~9x-30X) ?
gene genome protein
updated 22 months ago by ▴ 210 • written 22 months ago by ▴ 980
9
votes
3
replies
705
views
How do I extract a fasta sequence using the specific keyword (**Psychro**) ?
protein gene genome
written 23 months ago by ▴ 980
20
votes
5
replies
1.6k
views
ncbi-genome-download - bacterial and viral genomes ?
protein gene genome
updated 23 months ago by ▴ 210 • written 23 months ago by ▴ 980
7
votes
6
replies
1.1k
views
Removing bacterial sequences from assembled eukaryotic draft genomes ?
protein genome gene
updated 23 months ago by ★ 27k • written 23 months ago by ▴ 980
1
vote
5
replies
1.4k
views
BRAKER - Genome annotation, software error ?
Genome Software
updated 6 months ago by 43k • written 23 months ago by ▴ 980
3
votes
9
replies
1.9k
views
How to remove Duplicates in Sam file using AWK ?
protein genome gene
23 months ago by sunnykevin97 ▴ 980
11
votes
10
replies
4.5k
views
Gene starts with "LOC" prefix ?
RNA-Seq gene sequence
updated 23 months ago by 141k • written 3.8 years ago by ▴ 980
0
votes
0
replies
327
views
Downloading only specific datasets (Actinopterygii) from OrthoDB ?
genome gene
24 months ago by sunnykevin97 ▴ 980
0
votes
0
replies
422
views
How to generate Metaassembly for a genome?
genome gene
2.0 years ago by sunnykevin97 ▴ 980
1
vote
1
reply
634
views
Which sequences have to be used for prediction of orthologs, CDS or assembled contigs for phylogenomics study ?
genome gene
updated 2.0 years ago by 15k • written 2.0 years ago by ▴ 980
1
vote
3
replies
1.4k
views
Most efficient command line tool for translating the DNA sequences into Protein ?
gene genome protein
updated 2.0 years ago by ★ 27k • written 2.0 years ago by ▴ 980
16
votes
5
replies
947
views
How to replace the headers in a fasta files with same keyword?
gene genome
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 980
7
votes
9
replies
1.2k
views
Renaming fasta files with their headers (gene name) ?
gene genome
updated 2.0 years ago by 4.6k • written 2.0 years ago by ▴ 980
4
votes
5
replies
1.1k
views
What is the importance of partitions in phylogenomics analysis ?
gene genome
updated 15 months ago by ★ 1.7k • written 2.0 years ago by ▴ 980
4
votes
5
replies
1.2k
views
Adaptor trimming (best tools)?
gene genome
updated 2.1 years ago by ▴ 110 • written 2.1 years ago by ▴ 980
0
votes
2
replies
625
views
Denovo genome assembly with multiple insert size libraries, both short and long reads
gene genome
updated 2.1 years ago by ★ 27k • written 2.1 years ago by ▴ 980
0
votes
0
replies
278
views
Orthologs prediction from mitogenomes ?
gene genome
2.1 years ago by sunnykevin97 ▴ 980
0
votes
0
replies
250
views
How to extract mitgenomes from WGS data for non model organisms ?
gene genome
2.1 years ago by sunnykevin97 ▴ 980
3
votes
2
replies
485
views
Denovo assembly using Abyss-pe
genome
updated 2.1 years ago by 141k • written 2.1 years ago by ▴ 980
9
votes
2
replies
629
views
What is the difference b/w Ultra Conserved Elements (UCE) and orthologs
gene genome
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 980
7
votes
8
replies
3.7k
views
How do I get FASTA if i have a protein ID (in 10000's) ?
uniprot sequence gene
updated 2.4 years ago by ▴ 10 • written 4.3 years ago by ▴ 980
6
votes
8
replies
1.5k
views
what are the reasons to find so few Differentially expressed genes (DEGs)?
Gene RNA
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 980
7
votes
15
replies
7.1k
views
6 follow
blastn error - NCBI C++ Exception
assembly blast alignment
updated 2.1 years ago by 15k • written 3.1 years ago by ▴ 980
5
votes
3
replies
1.2k
views
How to calculate the p-value (?) using LRT from codeml output ?
alignment DNA Gene RNA
3.0 years ago by sunnykevin97 ▴ 980
6
votes
2
replies
1.3k
views
How to rename/replace the multiline fasta subsequence header in a fasta file?
DNA alignment fasta RNA
3.0 years ago by sunnykevin97 ▴ 980
6
votes
4
replies
1.2k
views
Concatenating fasta files based on prefix ?
aligment RNA DNA fasta
updated 3.1 years ago by 11k • written 3.1 years ago by ▴ 980
8
votes
2
replies
975
views
How to extract fasta sequences and only its ID's, based on the subsequence fasta numbers from a main fasta file ?
fasta RNA DNA alignment
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 980
4
votes
6
replies
1.5k
views
How to extract sub fasta sequences from a multiline fasta file ?
RNA DNA
3.1 years ago by sunnykevin97 ▴ 980
2
votes
1
reply
638
views
Phylip/Paml alignment output file explanation ?
RNA alignment DNA
updated 3.1 years ago by ★ 1.7k • written 3.1 years ago by ▴ 980
12
votes
16
replies
2.7k
views
6 follow
How to extract specific fasta files ?
fasta DNA alignment RNA
updated 3.1 years ago by 21k • written 3.1 years ago by ▴ 980
1
vote
4
replies
1.1k
views
How to find the true orthologs from recipocal blast hits (blastn) ?
RNA DNA blast alignment
22 months ago by sunnykevin97 ▴ 980
107 results • Page 1 of 3
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