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Showing :
questions
0
votes
2
replies
294
views
Regions not clear in VCF
whole-exome
variant-calling
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
priya.bmg
▴ 60
0
votes
5
replies
697
views
Confirming called variants
GATK
gnomAD
updated 6 months ago by
barslmn
★ 2.2k • written 6 months ago by
priya.bmg
▴ 60
0
votes
0
replies
336
views
Visualize tfrecords file from Deepvariant
gzipped
flow
tensor
Deepvariant
records
12 months ago by
priya.bmg
▴ 60
1
vote
2
replies
635
views
Sequencing old DNA samples
Sequencing
18 months ago by
priya.bmg
▴ 60
0
votes
1
reply
529
views
Pandas Data Frame
vcf
GATK-SV
pandas
annotation
updated 19 months ago by
husensofteng
▴ 410 • written 19 months ago by
priya.bmg
▴ 60
1
vote
5
replies
780
views
Coexpression analysis
CEMitool
R
updated 11 months ago by
Ram
43k • written 19 months ago by
priya.bmg
▴ 60
1
vote
4
replies
769
views
Loading Traitdata file for WGCNA analysis
R
WGCNA
updated 14 months ago by
Ram
43k • written 19 months ago by
priya.bmg
▴ 60
0
votes
0
replies
366
views
Gene prioritization
MAGMA
gene-prioritization
updated 11 months ago by
Ram
43k • written 20 months ago by
priya.bmg
▴ 60
2
votes
4
replies
1.9k
views
PacBio Raw Data File Formats
PacBio
updated 14 months ago by
Ram
43k • written 21 months ago by
priya.bmg
▴ 60
0
votes
1
reply
960
views
Pacbio workflow
structural
pbsv
variants
updated 22 months ago by
Maxine
▴ 40 • written 2.4 years ago by
priya.bmg
▴ 60
0
votes
2
replies
591
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 6 weeks ago by
Ram
43k • written 23 months ago by
priya.bmg
▴ 60
0
votes
0
replies
406
views
Methylation calling -Primrose Package
Methylation
CIGAR
PacBio
23 months ago by
priya.bmg
▴ 60
1
vote
2
replies
726
views
Hard filtering variants
whole
exome
data
2.2 years ago by
priya.bmg
▴ 60
3
votes
8
replies
1.9k
views
Lockfile command not found
Oslo
Lockfile
conda
concurrency
21 months ago by
priya.bmg
▴ 60
0
votes
0
replies
578
views
Snakemake workflow-PacBio
Snakemake
PacBio
2.3 years ago by
priya.bmg
▴ 60
0
votes
1
reply
1.0k
views
Filtering of rare variants
filtering
Rare
variants
updated 2.4 years ago by
Pierre Lindenbaum
161k • written 2.4 years ago by
priya.bmg
▴ 60
1
vote
2
replies
1.1k
views
Shared variants
filtering
variants
GATK
updated 2.5 years ago by
sbstevenlee
▴ 480 • written 2.5 years ago by
priya.bmg
▴ 60
0
votes
1
reply
640
views
Post filtering analysis for exome data
shared
rare
Hard-filtering
variants
updated 2.5 years ago by
Pierre Lindenbaum
161k • written 2.5 years ago by
priya.bmg
▴ 60
0
votes
0
replies
469
views
False negatives -Hard filtering
calling
Variant
GATK
Exome
Concordance
2.5 years ago by
priya.bmg
▴ 60
0
votes
1
reply
577
views
Individual or joint variant call ing
exome
Filtering
analysis
variants
updated 2.5 years ago by
brunobsouzaa
▴ 830 • written 2.5 years ago by
priya.bmg
▴ 60
0
votes
1
reply
571
views
Preprocessing exome sequence
Analysis
workflow-Germline
GATK
Variant
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
priya.bmg
▴ 60
0
votes
0
replies
651
views
Error in merged bam files
picard
GATK
NGS
2.7 years ago by
priya.bmg
▴ 60
0
votes
1
reply
650
views
Mark duplicates the bam files sorted by coordinates
Spark
duplicates
Mark
updated 2.7 years ago by
benformatics
3.9k • written 2.7 years ago by
priya.bmg
▴ 60
0
votes
9
replies
2.1k
views
Exec format error in unmapped bam file
bam
samtools
updated 14 months ago by
Ram
43k • written 2.7 years ago by
priya.bmg
▴ 60
3
votes
7
replies
2.2k
views
Snakemake bwa mem
Snakemake
bwa
updated 17 months ago by
Ram
43k • written 2.7 years ago by
priya.bmg
▴ 60
1
vote
11
replies
2.6k
views
Snakemake-Aligment using BWA-MEM2
memory-issue
Snakemake
updated 2.7 years ago by
Hyper_Odin
▴ 310 • written 2.7 years ago by
priya.bmg
▴ 60
2
votes
1
reply
624
views
Base Recalibration -Second recalibration table
base
GATK
NGS
recalibration
updated 18 months ago by
alexcouzens
• 0 • written 2.8 years ago by
priya.bmg
▴ 60
1
vote
1
reply
717
views
Base recalibration -Java run time error and no sequence dictionary
base
GATK
NGS
recalibration
updated 2.8 years ago by
brunobsouzaa
▴ 830 • written 2.8 years ago by
priya.bmg
▴ 60
3
votes
7
replies
2.5k
views
Read group info
BWA
bwa-mem2
updated 2.8 years ago by
Ishak
▴ 20 • written 2.8 years ago by
priya.bmg
▴ 60
2
votes
11
replies
6.7k
views
Alignment using bwa-mem2
alignment
bwa-mem2
2.8 years ago by
priya.bmg
▴ 60
1
vote
3
replies
1.6k
views
Read group info
info
read
BWA
group
bwa-mem2
updated 2.8 years ago by
GenoMax
142k • written 2.8 years ago by
priya.bmg
▴ 60
1
vote
2
replies
962
views
Remove adpater from reads
trimming
adpater
cutadapt
updated 2.8 years ago by
gb
★ 2.2k • written 2.8 years ago by
priya.bmg
▴ 60
4
votes
3
replies
1.4k
views
Decoy sequence for human reference GRCh38 assembly
reference
genome
Decoy
assembly
Human
updated 2.8 years ago by
Tm
★ 1.1k • written 2.8 years ago by
priya.bmg
▴ 60
2
votes
5
replies
1.8k
views
Reference file for base recalibration
base
NGS
recalibration
preprocessing
GATK
2.8 years ago by
priya.bmg
▴ 60
2
votes
2
replies
1.1k
views
Mark Duplicates
picard
GATK
NGS
2.8 years ago by
priya.bmg
▴ 60
2
votes
12
replies
2.2k
views
Bowtie2 aligner
Bowtie2
alignment
updated 2.8 years ago by
GenoMax
142k • written 2.8 years ago by
priya.bmg
▴ 60
1
vote
1
reply
559
views
Random Boolean network with same input nodes as original network
random Boolen network
Genetic regulatory network
updated 3.5 years ago by
Jean-Karim Heriche
27k • written 3.5 years ago by
priya.bmg
▴ 60
4
votes
7
replies
1.5k
views
Access metadata in GEO expression datasets
GEO
Gene expression
R
3.6 years ago by
priya.bmg
▴ 60
2
votes
4
replies
778
views
Time steps in node perturbation analysis
Perturbation
Simulations
Expression
time steps
updated 3.6 years ago by
Joe
21k • written 3.6 years ago by
priya.bmg
▴ 60
0
votes
0
replies
749
views
Allelic variation in a population
Conserved allelic variation
updated 5.4 years ago by
GenoMax
142k • written 5.4 years ago by
priya.bmg
▴ 60
0
votes
0
replies
933
views
miRNA nomenclature for mature miRNA sequence
RNA-Seq
updated 5.8 years ago by
WouterDeCoster
47k • written 5.8 years ago by
priya.bmg
▴ 60
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