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76
votes
22
replies
59k
views
17 follow
How To Download All Sra Samples At Once ?
geo sra
updated 2.5 years ago by 45k • written 11.6 years ago by ★ 1.5k
72
votes
22
replies
72k
views
16 follow
How To Convert Gencode Gtf Into Bed Format ?
gtf bed
updated 2.8 years ago by • 0 • written 12.9 years ago by ★ 1.5k
1
vote
0
replies
9.6k
views
Answer: A: Aligning Rna-Seq To Repetitive Line-1 Elements
updated 5.8 years ago by 45k • written 12.7 years ago by ★ 1.5k
46
votes
10
replies
118k
views
8 follow
Which Expression Units To Use, Fpkm Or Rpkm ?
fpkm rpkm rna-seq
updated 2.8 years ago by 45k • written 12.5 years ago by ★ 1.5k
0
votes
0
replies
2.3k
views
How To Stitch Maf Blocks
maf
updated 6.2 years ago by 20 • written 11.8 years ago by ★ 1.5k
22
votes
9
replies
15k
views
8 follow
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools
updated 6.5 years ago by ▴ 80 • written 12.7 years ago by ★ 1.5k
13
votes
4
replies
7.0k
views
Where Can I Download Most Updated Cnvs Of Hg19 ?
cnv
updated 6.8 years ago by 20 • written 12.9 years ago by ★ 1.5k
8
votes
13
replies
6.1k
views
9 follow
Where Can I Download Pirna (Piwi Rnas) Of Mouse (Mm9)
updated 3.5 years ago by 45k • written 11.9 years ago by ★ 1.5k
0
votes
1
reply
2.9k
views
How to rescale aggregation plots of different ChIP-seq datasets using ngsplot?
ChIP-Seq
8.2 years ago by biorepine ★ 1.5k
14
votes
5
replies
8.9k
views
SRX from SRR IDs
SRA
updated 3.6 years ago by 45k • written 10.8 years ago by ★ 1.5k
0
votes
0
replies
1.8k
views
What is the best way to find broad ChIP-Seq peaks using a BAM file with 600 million reads?
ChIP-Seq MACS
8.5 years ago by biorepine ★ 1.5k
24
votes
10
replies
8.7k
views
6 follow
P Value Or Statistical Significance Of Real Peak Compared To Random Peak Overlaps
chip-seq
updated 8.8 years ago by 22k • written 12.5 years ago by ★ 1.5k
2
votes
7
replies
4.3k
views
How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein Coding Genes ?
paired-end rna-seq overlap
updated 9.0 years ago by 20 • written 11.8 years ago by ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: How to calculate fraction of RNA-Seq reads mapped to a customised genomic locati
9.1 years ago by biorepine ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: How to calculate fraction of RNA-Seq reads mapped to a customised genomic locati
9.1 years ago by biorepine ★ 1.5k
0
votes
5
replies
3.0k
views
How to calculate fraction of RNA-Seq reads mapped to a customised genomic locations?
RNA-Seq
updated 9.1 years ago by 48k • written 9.1 years ago by ★ 1.5k
0
votes
2
replies
5.1k
views
Fr-Secondstrand Versus Fr-Unstranded Library Type In Tophat2
tophat2 rna-seq
updated 9.4 years ago by 20 • written 11.7 years ago by ★ 1.5k
4
votes
8
replies
4.6k
views
How To Liftover Genomic Regions From Dm3 (Drosophila) To Mm9 (Mouse)
mouse liftover
updated 9.7 years ago by • 0 • written 12.8 years ago by ★ 1.5k
50
votes
21
replies
45k
views
11 follow
How Do You Justify Your Rna-Seq Expression Threshold (Fpkm/Rpkm) ?
rpkm rna-seq cutoff fpkm
updated 3.8 years ago by 45k • written 12.7 years ago by ★ 1.5k
12
votes
17
replies
8.3k
views
Does The New Tophat2 - Bowtie2 Pipeline Really Map 100% Of The Rna-Seq Reads ? Is This Real ?
rna-seq samtools mapping tophat2 bowtie2
updated 3.8 years ago by 45k • written 12.7 years ago by ★ 1.5k
0
votes
0
replies
8.3k
views
Comment: C: How One Can Separate Noncoding From Coding Ucsc And Ensembl Transcripts
10.5 years ago by biorepine ★ 1.5k
0
votes
1
reply
2.8k
views
Comment: Comment: Quick way to find all the TFBS peak data for mouse and Human in GEO
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
59k
views
Comment: Comment: How To Download All Sra Samples At Once ?
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
59k
views
Comment: Comment: How To Download All Sra Samples At Once ?
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: Comment: Where can I download chromatin state genomic co-ordinates of C.elegans ?
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: Comment: Where can I download chromatin state genomic co-ordinates of C.elegans ?
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
1
vote
5
replies
3.0k
views
Where can I download chromatin state genomic co-ordinates of C.elegans ?
c.elegans chromatin-states
updated 2.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
3.2k
views
Comment: Comment: How to overlap transcription factor binding sites with unstranded transcript pro
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
1
reply
3.2k
views
Comment: Comment: How to overlap transcription factor binding sites with unstranded transcript pro
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
2
votes
5
replies
3.2k
views
How to overlap transcription factor binding sites with unstranded transcript promoters
promoters unstrandedoverlap tfbs
updated 4.5 years ago by 45k • written 10.9 years ago by ★ 1.5k
0
votes
0
replies
3.0k
views
Comment: C: iGenome indexes for Chimpanzee and Bonobo (panTro3)
11.0 years ago by biorepine ★ 1.5k
2
votes
5
replies
3.0k
views
iGenome indexes for Chimpanzee and Bonobo (panTro3)
bowtie tophat
updated 4.0 years ago by 45k • written 11.3 years ago by ★ 1.5k
4
votes
8
replies
4.8k
views
6 follow
How Can Cufflinks Assemble De Novo Transcripts With Many Exons When They Have 0 Fpkm
rna-seq cufflinks fpkm
updated 3.8 years ago by 45k • written 12.6 years ago by ★ 1.5k
0
votes
1
reply
3.0k
views
Comment: C: iGenome indexes for Chimpanzee and Bonobo (panTro3)
11.3 years ago by biorepine ★ 1.5k
2
votes
1
reply
3.1k
views
How to calculate phastcons scores for overlapping transcripts with different strands
phastcons
updated 11.4 years ago by 10k • written 11.4 years ago by ★ 1.5k
0
votes
1
reply
4.7k
views
How to prepare GSEA Pre-Ranked input file
GSEA
updated 4.0 years ago by 45k • written 11.4 years ago by ★ 1.5k
0
votes
0
replies
59k
views
Comment: C: How To Download All Sra Samples At Once ?
11.6 years ago by biorepine ★ 1.5k
1
vote
1
reply
3.7k
views
Does Any One Know Why And How To Calculate Tissue Specificity Score
rna-seq
updated 11.6 years ago by 8.3k • written 12.7 years ago by ★ 1.5k
0
votes
0
replies
5.1k
views
Answer: A: Fr-Secondstrand Versus Fr-Unstranded Library Type In Tophat2
11.7 years ago by biorepine ★ 1.5k
0
votes
1
reply
14k
views
Comment: C: Tophat Library Type And Pair Orientation For Illumina Data
11.7 years ago by biorepine ★ 1.5k
9
votes
5
replies
6.3k
views
How To Split Chr11 Bam File In To 2 Halves ?
bam split
updated 11.7 years ago by 166k • written 11.7 years ago by ★ 1.5k
0
votes
1
reply
4.3k
views
Comment: C: How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein
11.8 years ago by biorepine ★ 1.5k
0
votes
0
replies
4.3k
views
Comment: C: How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein
11.8 years ago by biorepine ★ 1.5k
0
votes
1
reply
4.3k
views
Comment: C: How To Count Stand-Specific Paired-End Rna-Seq Reads Overlapping Known Protein
11.8 years ago by biorepine ★ 1.5k
1
vote
2
replies
3.9k
views
How To Calculate Base-Level Read Coverage Of Each Transcript ?
rna-seq coverage
updated 11.8 years ago by ★ 2.7k • written 11.8 years ago by ★ 1.5k
0
votes
1
reply
3.3k
views
Manual Transcriptome Reconstruction Using Rna-Seq Reads (Hg19)
rna-seq cufflinks
updated 12.1 years ago by 105k • written 12.1 years ago by ★ 1.5k
0
votes
0
replies
8.3k
views
Comment: C: How One Can Separate Noncoding From Coding Ucsc And Ensembl Transcripts
12.3 years ago by biorepine ★ 1.5k
0
votes
1
reply
8.3k
views
Comment: C: How One Can Separate Noncoding From Coding Ucsc And Ensembl Transcripts
12.3 years ago by biorepine ★ 1.5k
0
votes
1
reply
8.3k
views
Comment: C: How One Can Separate Noncoding From Coding Ucsc And Ensembl Transcripts
12.3 years ago by biorepine ★ 1.5k
6
votes
18
replies
8.3k
views
How One Can Separate Noncoding From Coding Ucsc And Ensembl Transcripts
code ucsc ensembl refseq
updated 3.8 years ago by 45k • written 12.3 years ago by ★ 1.5k
133 results • Page 1 of 3
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