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questions
1
vote
0
replies
143
views
checkm lineage.ms output file
checkm
lineage
5 weeks ago by
A_heath
▴ 160
5
votes
2
replies
359
views
Difference between mapping quality and minimum base quality
freebayes
7 weeks ago by
A_heath
▴ 160
0
votes
0
replies
132
views
Issue opening modified .gff file in Artemis
gff
Artemis
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
A_heath
▴ 160
0
votes
1
reply
267
views
Best Freebayes parameter for haploid variant detection
Freebayes
detection
variant
updated 9 weeks ago by
LauferVA
4.2k • written 9 weeks ago by
A_heath
▴ 160
9
votes
5
replies
730
views
Prophage prediction tool
prophage
PHASTER
prediction
updated 9 months ago by
GenoMax
142k • written 9 months ago by
A_heath
▴ 160
18
votes
12
replies
1.7k
views
Compare two very close genomes (.fasta)
Genome
updated 12 months ago by
shenwei356
8.5k • written 12 months ago by
A_heath
▴ 160
6
votes
4
replies
838
views
Equivalent to SeqMan alignment tool
SeqMan
alignments
15 months ago by
A_heath
▴ 160
8
votes
3
replies
1.2k
views
Package installation error using Bioconda
antismash
Bioconda
17 months ago by
A_heath
▴ 160
1
vote
0
replies
429
views
Identification of V1 to V9 regions 16S
V9
V1
16S
identification
updated 19 months ago by
Matthias Zepper
4.6k • written 19 months ago by
A_heath
▴ 160
12
votes
8
replies
1.3k
views
Align 16S sequence to a reference
16S
sequence
alignment
updated 19 months ago by
Matthias Zepper
4.6k • written 19 months ago by
A_heath
▴ 160
1
vote
0
replies
435
views
Strand orientation and GC skew
CGView
strand-orientation
GC-skew
updated 7 months ago by
Ram
43k • written 21 months ago by
A_heath
▴ 160
15
votes
6
replies
2.2k
views
Updating BLAST+ and PATH variable
BLAST
PATH
21 months ago by
A_heath
▴ 160
23
votes
12
replies
2.7k
views
Genes encoded on both strands of DNA?
Genes
strand
updated 7 months ago by
Ram
43k • written 2.0 years ago by
A_heath
▴ 160
1
vote
2
replies
899
views
VirulenceFinder docker pip3 not found
VIrulenceFinder
pip3
docker
updated 2.1 years ago by
Wayne
★ 2.0k • written 2.1 years ago by
A_heath
▴ 160
0
votes
1
reply
525
views
Close genome comparison
Mauve
Mugsy
genome-comparison
GSAlign
updated 7 months ago by
Ram
43k • written 2.2 years ago by
A_heath
▴ 160
7
votes
6
replies
1.6k
views
Bacterial genome hybrid assembly
Bacteria
Assembly
Genome
2.2 years ago by
A_heath
▴ 160
6
votes
3
replies
3.3k
views
Hybrid assembly SPAdes (Ox. Nanopore + Illumina)
assembly
hybrid
SPAdes
updated 2.7 years ago by
samuel.a.odonnell
▴ 520 • written 2.7 years ago by
A_heath
▴ 160
8
votes
4
replies
984
views
BLASTn: extract unmatched regions only
BLASTn
updated 7 months ago by
Ram
43k • written 2.4 years ago by
A_heath
▴ 160
0
votes
0
replies
383
views
Sort aligned sequences - Mugsy
genome
alignment
mugsy
2.5 years ago by
A_heath
▴ 160
8
votes
5
replies
2.0k
views
BLASTp command line : filtering results by a minimum % of identity and % coverage
BLASTp
updated 7 months ago by
Ram
43k • written 2.6 years ago by
A_heath
▴ 160
0
votes
0
replies
476
views
Recommendations for a tool to check multiplex dPCR cross hybridations between probes
probes
dPCR
multiplex
updated 10 months ago by
Ram
43k • written 2.6 years ago by
A_heath
▴ 160
9
votes
4
replies
1.5k
views
Illumina Q score
Illumina
quality-score
updated 7 months ago by
Ram
43k • written 2.7 years ago by
A_heath
▴ 160
2
votes
3
replies
1.9k
views
Racon command line with paired-ends Illumina reads
Illumina
Racon
updated 7 months ago by
Ram
43k • written 2.7 years ago by
A_heath
▴ 160
7
votes
4
replies
2.4k
views
Structural variant breakend
structural-variant
updated 7 months ago by
Ram
43k • written 2.7 years ago by
A_heath
▴ 160
1
vote
1
reply
876
views
IGV sequence name error .sam file
sam
graphmap
IGV
updated 2.8 years ago by
Antonio R. Franco
★ 5.1k • written 2.8 years ago by
A_heath
▴ 160
9
votes
6
replies
1.3k
views
Genotype meaning
genotype
BL21
2.8 years ago by
A_heath
▴ 160
0
votes
1
reply
2.2k
views
BL21 vs BL21 Star
E.coli
BL21
updated 13 months ago by
Ram
43k • written 2.8 years ago by
A_heath
▴ 160
0
votes
2
replies
1.1k
views
Unicycler error not enough memory available
assembly
unicycler
memory
updated 2.8 years ago by
Mensur Dlakic
★ 27k • written 2.8 years ago by
A_heath
▴ 160
5
votes
2
replies
758
views
Annotation Mycoplasma genome using Prokka
Mycoplasma
Annotation
Prokka
2.9 years ago by
A_heath
▴ 160
0
votes
3
replies
1.1k
views
Mapping fastq files to reference genome
reference-genome
mapping
fastq
updated 7 months ago by
Ram
43k • written 2.9 years ago by
A_heath
▴ 160
0
votes
4
replies
2.6k
views
Flye assembly of a bacterial genome stuck
assembly
Flye
updated 2.9 years ago by
andres.firrincieli
3.6k • written 2.9 years ago by
A_heath
▴ 160
5
votes
2
replies
1.2k
views
Assembly oxford nanopore data
assembly
oxford
nanopore
2.9 years ago by
A_heath
▴ 160
0
votes
0
replies
443
views
Distinction of two very close bacterial strains
mutations
bacteria
updated 7 months ago by
Ram
43k • written 2.9 years ago by
A_heath
▴ 160
0
votes
1
reply
597
views
Chosing a phylogenetic tree construction method
tree
phylogenetic
method
updated 3.0 years ago by
Colaptes
▴ 90 • written 3.0 years ago by
A_heath
▴ 160
3
votes
3
replies
815
views
Phylogenetic tree of gene clusters
evolution
clusters
phylogeny
updated 3.0 years ago by
Joe
21k • written 3.0 years ago by
A_heath
▴ 160
0
votes
1
reply
634
views
Detection of bacterial SNP using regular PCR primers
detection
PCR
SNP
updated 3.1 years ago by
David Parry
▴ 130 • written 3.1 years ago by
A_heath
▴ 160
5
votes
4
replies
1.1k
views
Complete of Illumina raw reads
assembly
illumina
3.1 years ago by
A_heath
▴ 160
0
votes
0
replies
475
views
How to predict gene promoters in Lactobacillus?
lactobacillus
promoters
3.1 years ago by
A_heath
▴ 160
11
votes
4
replies
1.1k
views
How to determine % similarity between genomes?
mauve
mugsy
genome-alignment
updated 7 months ago by
Ram
43k • written 3.1 years ago by
A_heath
▴ 160
1
vote
5
replies
824
views
Mugsy percentage of identity
Mugsy
Genome-alignment
updated 7 months ago by
Ram
43k • written 3.2 years ago by
A_heath
▴ 160
16
votes
16
replies
2.3k
views
Species identifcation using 16s rRNA
16srRNA
fasta
updated 7 months ago by
Ram
43k • written 3.2 years ago by
A_heath
▴ 160
7
votes
3
replies
868
views
blastn with short sequences gives no results in the corresponding genome
primers
blastn
updated 7 months ago by
Ram
43k • written 3.3 years ago by
A_heath
▴ 160
0
votes
3
replies
890
views
How to add translation of CDS in Artemis?
translation
Artemis
updated 7 months ago by
Ram
43k • written 3.3 years ago by
A_heath
▴ 160
0
votes
1
reply
875
views
How to identify specific region using Mauve?
Mauve
primers
updated 7 months ago by
Ram
43k • written 3.4 years ago by
A_heath
▴ 160
0
votes
7
replies
927
views
Mugsy error -directory must be a directory
Mugsy
updated 7 months ago by
Ram
43k • written 3.4 years ago by
A_heath
▴ 160
2
votes
3
replies
731
views
How to change standard genetic code in Artemis?
Mycosplasma
Artemis
updated 7 months ago by
Ram
43k • written 3.4 years ago by
A_heath
▴ 160
0
votes
1
reply
1.0k
views
Issue interpreting plasmidSPAdes output
plasmidSPAdes
updated 7 months ago by
Ram
43k • written 3.5 years ago by
A_heath
▴ 160
6
votes
4
replies
1.5k
views
How to sort blast results by a minimum % of identical matches?
blast
updated 7 months ago by
Ram
43k • written 3.5 years ago by
A_heath
▴ 160
8
votes
2
replies
3.5k
views
How to edit fasta headers to keep only ID and organism?
fasta
updated 7 months ago by
Ram
43k • written 3.6 years ago by
A_heath
▴ 160
0
votes
3
replies
1.0k
views
Download multiple protein sequences from IMG IDs
img
gene
updated 13 months ago by
Ram
43k • written 3.6 years ago by
A_heath
▴ 160
61 results • Page
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