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9
votes
12
replies
4.7k
views
Custom Reference panel creation for data imputation from .vcf files
imputation reference panel
updated 6.4 years ago by 87k • written 6.4 years ago by ▴ 490
5
votes
4
replies
3.0k
views
GitHub-GTEx Pipeline- how to execute ?
GTEx pipeline execution rna-seq genotype
updated 3.0 years ago by 22k • written 6.4 years ago by ▴ 490
0
votes
2
replies
2.6k
views
GDC - count Matrix data
GDC Count RNA-Seq
updated 6.5 years ago by ▴ 790 • written 6.5 years ago by ▴ 490
8
votes
11
replies
4.9k
views
TCGA - COAD read data gene expression analysis
GDC gene expression RNA-Seq
updated 6.5 years ago by ▴ 790 • written 6.5 years ago by ▴ 490
3
votes
7
replies
3.2k
views
DeconstructSigs - Multiple sample size(~90 samples)
deconstructsigs maf multiple samples
updated 6.6 years ago by ★ 1.2k • written 6.6 years ago by ▴ 490
0
votes
0
replies
1.8k
views
Deconstruct signature package
maf header names
6.7 years ago by David_emir ▴ 490
0
votes
0
replies
1.4k
views
Maf to VCF file convertion, offline_cache not downloading
maf vcf
6.7 years ago by David_emir ▴ 490
0
votes
1
reply
2.6k
views
mutation signatures from MAF's, and decompose them into Stratton signatures
stratton maf Mutation-signature
updated 13 months ago by 43k • written 6.8 years ago by ▴ 490
2
votes
4
replies
3.4k
views
CollectAlignmentSummaryMetrics from Picard
picard CollectAlignmentSummaryMetrics
updated 7.0 years ago by 161k • written 7.0 years ago by ▴ 490
11
votes
10
replies
11k
views
Can Limma package be used for RNA-Seq Differential gene expression analysis for Quantile normalized log transformed RPKM data
RNA-Seq limma TCGA
updated 15 months ago by 43k • written 9.0 years ago by ▴ 490
5
votes
5
replies
5.6k
views
Machine Learning - RNAseq
RNA-Seq Machine learning training data
updated 7.1 years ago by ▴ 60 • written 8.2 years ago by ▴ 490
12
votes
7
replies
3.8k
views
How to conduct pathway analysis from VCF file?
vcf Exome seq GATK
updated 7.2 years ago by ▴ 1000 • written 7.2 years ago by ▴ 490
0
votes
0
replies
2.8k
views
Error while annotating With SnpEff
SnpEff GFF file Error
7.3 years ago by David_emir ▴ 490
5
votes
6
replies
2.2k
views
Variant Calling - for multiple samples need advice
Variant Calling pipeline
updated 7.4 years ago by 47k • written 7.4 years ago by ▴ 490
0
votes
2
replies
2.1k
views
Not able to UPDATE BWA in Centos
bwa new version
7.6 years ago by David_emir ▴ 490
13
votes
8
replies
5.2k
views
Genomic Matrix data from TCGA need to be analysied for Differential gene expression
genomicMatrix DGE TCGA
updated 15 months ago by 43k • written 9.0 years ago by ▴ 490
5
votes
3
replies
1.8k
views
Program/Tool that can determine whether two profiles are likely to be from the same cell line, based on sequence analysis (RNA seq and Chip Seq).
RNA-Seq next-gen ChIP-Seq
updated 10 months ago by 43k • written 8.3 years ago by ▴ 490
1
vote
1
reply
8.4k
views
voom : mean variance trend plot, How to interpret the plot
Limma RNA-Seq voom
updated 17 months ago by 43k • written 8.8 years ago by ▴ 490
0
votes
1
reply
2.5k
views
Chipster - launching Problem
VM chipster
updated 24 months ago by 43k • written 9.2 years ago by ▴ 490
4
votes
10
replies
4.3k
views
TCGA normalized count data of 1000 samples for DGE
RNA-Seq TCGA
updated 15 months ago by 43k • written 9.0 years ago by ▴ 490
3
votes
3
replies
2.9k
views
Breast cancer TCGA data - DGE analysis
RNA-Seq Voom Raw_Count TCGA
updated 15 months ago by 43k • written 9.0 years ago by ▴ 490
6
votes
6
replies
7.0k
views
Trimmomatic not able to remove low sequence bases
trimmomatic seq RNA
updated 23 months ago by 43k • written 9.1 years ago by ▴ 490
0
votes
0
replies
2.3k
views
Calculating AUC for individual Probe ID(affy)
AUC ROC Affymetry
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 490
2
votes
5
replies
4.0k
views
Annotating RNA-seq gene ids (differentially expressed)
RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 490
3
votes
4
replies
2.3k
views
ERROR RNA SEQ QC analysis step
RNA-Seq
updated 9.5 years ago by ★ 3.1k • written 9.5 years ago by ▴ 490
7
votes
5
replies
4.5k
views
Tophat Protocol - nature paper
RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 490
9
votes
10
replies
5.9k
views
Pre-processing And Quality Control of the Raw NGS Data -- > trimming
RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 490
2
votes
3
replies
2.1k
views
To Generate biological hypotheses based on the specific genetic abnormalities of the cancer cell lines.
Hypotheses-generation cell-lines IC50
updated 2.3 years ago by 43k • written 9.5 years ago by ▴ 490
0
votes
1
reply
1.5k
views
What Types Of Analyses Are Typically Done After Snp Genotyping?
analysis genotype snp
10.8 years ago by David_emir ▴ 490
38
votes
7
replies
17k
views
How To Get Started Learning Gwas Analysis
gwas pathway analysis imputation
updated 10.8 years ago by ★ 1.1k • written 10.8 years ago by ▴ 490
0
votes
1
reply
2.7k
views
How To Perform Gender Stratification Analysis For Gwas Data
gwas pipeline plink pathway
updated 10.8 years ago by 100k • written 10.8 years ago by ▴ 490
81 results • Page 2 of 2
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