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2
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9
replies
3.8k
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Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 20 months ago by ▴ 40 • written 7.1 years ago by ▴ 670
2
votes
2
replies
1.1k
views
Interpretting phastConsElements from USCS Table Browser
phastcons conservation genomics ucsc
updated 14 months ago by 43k • written 2.6 years ago by ▴ 670
0
votes
3
replies
3.3k
views
Problems Using Ldhat Example Files
ld
updated 3.3 years ago by 20 • written 10.2 years ago by ▴ 670
1
vote
2
replies
1.0k
views
Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
3.8 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
578
views
Rounding error in allele frequency estimates in PLINK
SNP plink
3.9 years ago by GabrielMontenegro ▴ 670
2
votes
8
replies
2.0k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
3.9 years ago by GabrielMontenegro ▴ 670
1
vote
3
replies
4.4k
views
SNP scoring using PLINK
plink SNP
updated 18 months ago by 43k • written 8.7 years ago by ▴ 670
15
votes
17
replies
8.6k
views
Remove not polymorphic sites from VCF
vcf genome
updated 2.2 years ago by ▴ 310 • written 5.3 years ago by ▴ 670
4
votes
1
reply
3.7k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
4.9 years ago by GabrielMontenegro ▴ 670
0
votes
4
replies
4.3k
views
Estimating LD score in PLINK
plink ld ldscore
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 670
0
votes
2
replies
3.9k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 5.1 years ago by 87k • written 7.0 years ago by ▴ 670
15
votes
5
replies
5.8k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 5.2 years ago by 87k • written 5.2 years ago by ▴ 670
0
votes
5
replies
3.0k
views
Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
5.4 years ago by GabrielMontenegro ▴ 670
9
votes
13
replies
8.2k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 5.5 years ago by • 0 • written 6.6 years ago by ▴ 670
5
votes
2
replies
4.8k
views
Interpreting Ldhat Outputs
recombination
updated 5.6 years ago by • 0 • written 10.2 years ago by ▴ 670
0
votes
1
reply
1.9k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 670
3
votes
2
replies
2.9k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 11 months ago by ▴ 40 • written 6.1 years ago by ▴ 670
0
votes
1
reply
3.4k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 6.5 years ago by 20 • written 6.6 years ago by ▴ 670
0
votes
1
reply
3.4k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 6.6 years ago by ▴ 280 • written 6.6 years ago by ▴ 670
0
votes
1
reply
2.0k
views
How to estimate significance of RPKM value on GTEX
rna-seq gene expression
updated 6.7 years ago by 20 • written 6.7 years ago by ▴ 670
0
votes
1
reply
2.9k
views
Estimating heritability using GCTA or LDAK in an admixed population
GCTA admixture heritability
updated 6.7 years ago by ▴ 110 • written 7.5 years ago by ▴ 670
1
vote
5
replies
4.1k
views
Meta-analysis in PLINK - What to use in order to do a forest plot
meta-analysis plink beta
updated 6.8 years ago by • 0 • written 7.2 years ago by ▴ 670
3
votes
1
reply
1.9k
views
Meaning of "EX_TARGET" in VCF files 1000 genomes
genome vcf
updated 6.9 years ago by 161k • written 6.9 years ago by ▴ 670
0
votes
1
reply
1.8k
views
Getting Precomputed Conservation Scores
SNP genome conservation
updated 7.0 years ago by 5.7k • written 7.0 years ago by ▴ 670
10
votes
10
replies
2.8k
views
Good books to learn probability distributions
books statistics
updated 7.0 years ago by 54k • written 7.0 years ago by ▴ 670
0
votes
2
replies
1.6k
views
Power of ADMXITURE mapping
admixture gwas power
updated 7.0 years ago by ★ 2.8k • written 7.2 years ago by ▴ 670
3
votes
6
replies
4.3k
views
How to get IDs of family trios in 1000 genomes project?
genome
updated 7.1 years ago by ★ 2.8k • written 7.1 years ago by ▴ 670
0
votes
0
replies
1.4k
views
Gutenkunst model (2009) in ms or msms
genome ms msms simulation
7.1 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
5.4k
views
VCFtools: --window-pi and --from-bp --to-bp produces different start and ending windows
vcf SNP genome
7.1 years ago by GabrielMontenegro ▴ 670
5
votes
1
reply
4.1k
views
Understanding standardized genotype matrix
SNP genome
updated 7.1 years ago by ★ 1.9k • written 7.1 years ago by ▴ 670
1
vote
3
replies
1.3k
views
The Variance in HWE
HWE
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 670
0
votes
3
replies
3.2k
views
Power of GWAS: categorical vs quantitative
GWAS SNP
7.2 years ago by GabrielMontenegro ▴ 670
1
vote
3
replies
3.1k
views
Estimating FST per genome
next-gen genome fst
updated 7.4 years ago by 12k • written 7.4 years ago by ▴ 670
4
votes
6
replies
1.9k
views
Heritability of pigmentation traits
heritability
updated 7.5 years ago by ★ 3.0k • written 7.5 years ago by ▴ 670
0
votes
1
reply
2.5k
views
Why can we sum up LOD-scores in linkage analysis over different families?
linkage
7.5 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
3.6k
views
Changing to ancestral/derived states using vcftools
vcf 1000genomes
7.6 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.2k
views
Finding only biallelic SNPs from the 1000GP BCF files
vcf SNP
7.6 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
1.6k
views
Correcting for multiple testing in Admixture Mapping in Latinos
genome gwas admixture
7.8 years ago by GabrielMontenegro ▴ 670
0
votes
2
replies
2.0k
views
Download all Biological Pathways present in Biosystem from NCBI
genome
updated 8.0 years ago by 161k • written 8.0 years ago by ▴ 670
2
votes
6
replies
8.3k
views
Getting the function of genes based on gene names
genome
updated 8.1 years ago by 28k • written 8.2 years ago by ▴ 670
0
votes
5
replies
2.8k
views
Goseq package in R:getting terms after using getgo
R GO Bioconductor
updated 8.2 years ago by 8.3k • written 8.2 years ago by ▴ 670
0
votes
1
reply
2.9k
views
Subsetting individuals from IMPUTE2 ref files: .hap and .legend
genome impute2
8.2 years ago by GabrielMontenegro ▴ 670
5
votes
4
replies
5.7k
views
Gene plot similar to LocusZoom
R visualization
updated 21 months ago by 43k • written 8.3 years ago by ▴ 670
0
votes
1
reply
2.9k
views
Armitage's trend test for the 2x3 genotype table
statistics genetics
updated 20 months ago by 43k • written 8.4 years ago by ▴ 670
5
votes
1
reply
3.8k
views
GWAS result with pval equal zero. How to handle and how to plot?
gwas SNP
updated 15 months ago by 43k • written 8.9 years ago by ▴ 670
0
votes
4
replies
2.2k
views
Ambiguous SNP function in dbSNP
SNP gene genome
updated 23 months ago by 43k • written 9.1 years ago by ▴ 670
2
votes
2
replies
4.2k
views
Genetic Map in HapMap based on which population?
recombination snps
updated 5 months ago by • 0 • written 9.1 years ago by ▴ 670
3
votes
2
replies
1.8k
views
Mitochondrial genes in autosomes in humans
gene genome
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 670
2
votes
3
replies
5.6k
views
Changing Build From 37 To 36 In Snp Data
snp plink genome
updated 10.2 years ago by ★ 3.4k • written 10.2 years ago by ▴ 670
3
votes
3
replies
4.1k
views
Using Ldhat To Estimate Effective Population Size
snps recombination
updated 10.2 years ago by 28k • written 10.2 years ago by ▴ 670
52 results • Page 1 of 2
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