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121,961 results • Page
182 of 2440
Sort: Rank
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Votes
Replies
9
votes
2
replies
1.1k
views
Batch effect correction between Bulk RNA-Seq and scRNA-Seq's clusters
rna-seq
scrna-seq
deg
deseq2
updated 22 months ago by
LauferVA
4.8k • written 22 months ago by
ahmad mousavi
▴ 800
3
votes
4
replies
6.5k
views
error while running cellranger: an extremely low rate of correct barcodes was observed for all the candidate chemistry choices for the input
scRNA-seq
cellranger
FASTQ
22 months ago by
jude
• 0
4
votes
2
replies
1.4k
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq
deseq2
updated 22 months ago by
i.sudbery
22k • written 22 months ago by
bioinfo
▴ 160
0
votes
7
replies
2.3k
views
Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 22 months ago by
Ram
45k • written 22 months ago by
George
▴ 20
0
votes
3
replies
1.6k
views
percentage of cells in each cluster- Seurat
seurat
updated 22 months ago by
seidel
11k • written 22 months ago by
odi
▴ 10
0
votes
3
replies
1.4k
views
Bowtie2 Local Alignment Not Working
bowtie2
local-alignment
amplicon
sequencing
updated 22 months ago by
ATpoint
89k • written 22 months ago by
lvl2111
• 0
0
votes
0
replies
695
views
PANTHER functional classification
PANTHER
Gene-Ontology
updated 22 months ago by
Ram
45k • written 22 months ago by
rls_08
▴ 40
0
votes
2
replies
2.0k
views
How to perform liftover from 38 to 37 in R?
R
genomics
hail
liftover
gwas
22 months ago by
DN99
▴ 20
11
votes
6
replies
3.8k
views
6 follow
UMAP or TSNE for single cells?
single-cell
updated 22 months ago by
jamesxli2007
▴ 40 • written 22 months ago by
synat.keam
▴ 120
2
votes
2
replies
924
views
PopulatePHGDBPipelinePlugin fails on example database
phg
22 months ago by
ryan
• 0
3
votes
1
reply
774
views
Data for non-human primates
APPRIS
UCSC
GENCODE
Non-human-primates
updated 22 months ago by
GenoMax
154k • written 22 months ago by
arsala521
▴ 60
9
votes
15
replies
2.7k
views
STAR output
STAR
updated 22 months ago by
Ram
45k • written 22 months ago by
san96
▴ 190
0
votes
0
replies
520
views
Circos error value
circos
22 months ago by
KiInga
• 0
0
votes
0
replies
674
views
beagle to gds for admixture mapping
admixture
genesis
gwastools
gds
beagle
22 months ago by
nanodano
▴ 30
0
votes
2
replies
786
views
error in determining minimum contigs in Velvet
contigs
terminal
velvet
22 months ago by
Kárita
• 0
2
votes
2
replies
1.1k
views
DESeq2 installation failures
DEseq2
updated 22 months ago by
Michael
56k • written 22 months ago by
dantuluri
• 0
7
votes
10
replies
3.2k
views
Uncertainty of how to proceed with Metagenomic Analysis of WGS data
Sequencing
Viral
Binning
Assembly
22 months ago by
DonPhager
• 0
1
vote
4
replies
4.0k
views
WGCNA Analysis - blockwiseModules data processing
WGCNA
blockwiseModules
updated 22 months ago by
GenoMax
154k • written 2.1 years ago by
Raito92
▴ 100
0
votes
2
replies
908
views
how to fix low RNA input in bulk RNAseq data analysis?
RNAseq
updated 22 months ago by
ATpoint
89k • written 22 months ago by
Sara
▴ 280
2
votes
3
replies
1.0k
views
Compare two VCF / BAM / FASTQ files for degree of relativity
relativity
compare
decoding
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
Akos
▴ 10
1
vote
4
replies
1.5k
views
Efficient Bulk Data Retrieval from NCBI BioProject
ncbi
SRAtoolkit
prefetch
22 months ago by
George
▴ 20
0
votes
2
replies
1.3k
views
RepeatMasker version 4.1.5 speciess not known error
RepeatMasker
RepeatMasker4.1.5
updated 22 months ago by
biofalconch
★ 1.3k • written 22 months ago by
ambi1999
▴ 50
3
votes
4
replies
1.8k
views
Downstream analysis with DEseq2 normalization
DEseq2
integration
22 months ago by
QX
▴ 80
4
votes
2
replies
1.0k
views
Normalization function in DEseq2
DEseq2
22 months ago by
QX
▴ 80
0
votes
0
replies
522
views
ripSeek error : no method or default for coercing “NULL” to “GRanges”
R
ripSeek
ripSeeker
RIP
22 months ago by
maria
• 0
1
vote
1
reply
715
views
Ref seq/Gene bank accession to Entrez id for cluster profiler
IDconversion
NCBI
ClusterProfiler
Genebank
updated 22 months ago by
GenoMax
154k • written 22 months ago by
mail2steff
▴ 70
1
vote
3
replies
3.6k
views
[PLINK] Error: Duplicate ID when running an --update-ids
software-error
GWAS
SNP
Plink
updated 22 months ago by
marcoabbestia
• 0 • written 4.6 years ago by
njofrica
▴ 10
12
votes
12
replies
8.1k
views
How to download FASTQ files from the European Nucleotide Archive (ENA) to use them with FastQC etc..
ENA
fastq
R
FastQC
python
updated 16 months ago by
psm
▴ 170 • written 22 months ago by
sil_bioinfo
▴ 60
0
votes
0
replies
589
views
Help with coshing mutations for oncoplot
oncoplot
maftools
22 months ago by
Toni
• 0
1
vote
2
replies
1.1k
views
Diffbind low p-value but high FDR
ATAC-seq
diffbind
22 months ago by
LC
▴ 10
0
votes
0
replies
740
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq
DNAseq
NGS
Workshop
22 months ago by
Lars
★ 1.1k
0
votes
0
replies
566
views
News:
Course - Computational Tumor Evolution
Tumor-Evolution
Cancer-Genomics
updated 22 months ago by
Ram
45k • written 22 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
560
views
Bedtools coverage -hist "all" in chr column
-hist
Coverage
option
breadth
Bedtools
22 months ago by
Smriti
▴ 40
3
votes
3
replies
1.6k
views
Smart seq3 analysis
smart
seq3
upload
analysis
updated 22 months ago by
dsull
★ 7.7k • written 22 months ago by
Eun
• 0
7
votes
7
replies
1.5k
views
Cut fastq files
files
fastq
Cut
22 months ago by
san96
▴ 190
0
votes
2
replies
1.8k
views
featureCount Error "No paired-end reads were detected in paired-end read library"
Subread
RNAseq
featureCount
updated 22 months ago by
rpolicastro
13k • written 22 months ago by
cook.675
▴ 250
0
votes
0
replies
811
views
Job:
Assistant Teaching Professor in Biological Sciences, Univ of California San Diego, La Jolla, CA
LifeScience
HigherEducation
Biology
UCSD
updated 22 months ago by
GenoMax
154k • written 22 months ago by
UCSDBioSci
▴ 30
0
votes
1
reply
623
views
Error with HTseq RNAseq read count
RNAseq
HTseq
updated 22 months ago by
GenoMax
154k • written 22 months ago by
Catalina
• 0
0
votes
4
replies
1.6k
views
Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind
csaw
normalization
spikein
ChIPseq
22 months ago by
jared.andrews07
★ 19k
0
votes
2
replies
1.2k
views
How to change "CompressedGRangesList" to "GRangesList"
liftOver
minfi
22 months ago by
Aki
▴ 20
0
votes
3
replies
1.0k
views
Can FPKM be used to create bar graphs for DEGs?
RNA-seq
updated 22 months ago by
Ram
45k • written 22 months ago by
junli1988
• 0
0
votes
3
replies
1.1k
views
RNA star taking more than 24h to complete 2nd pass
rna-seq
star
updated 22 months ago by
Ram
45k • written 22 months ago by
manuelmourato25
• 0
1
vote
1
reply
779
views
Eigen_phred_coding values interpretation
variation
SNP
annotation
22 months ago by
Lukas
▴ 130
1
vote
1
reply
694
views
PHG - ImputePipelinePlugin fails when trying to imputing SNPs on a gvcf file.
phg
updated 22 months ago by
pjb39
▴ 220 • written 22 months ago by
sjp6181
• 0
0
votes
1
reply
1.9k
views
Trouble with Ligand-Protein Docking in AutoDock Vina: Shows an error when docked against a new set of ligands
Docking
Protein-receptor
Ligand-Protein-Docking
AutoDock-Vina
updated 22 months ago by
Ram
45k • written 22 months ago by
bandaru
• 0
0
votes
0
replies
771
views
Deconvolution using cibersortx, help with real example
deconvolution
cibersortx
22 months ago by
Dyno
• 0
4
votes
4
replies
1.6k
views
Best software to get summary statistics from nanopore sequencing runs
wgs
nanopore
sequencing
22 months ago by
Mark
▴ 60
0
votes
0
replies
536
views
How to correct the position of my primers
Python
primer3
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
Keith
• 0
0
votes
7
replies
1.5k
views
Using Primer3 with python to genotype a SNP at a particular position
primer3
python
position
primer
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
Keith
• 0
0
votes
2
replies
1.1k
views
Illumina versus Oxford Nanopore Technologies BUSCO Scores
Nanopore
Oxford
Technologies
BUSCO
Illumina
updated 22 months ago by
liorglic
★ 1.5k • written 22 months ago by
Sarah
• 0
121,961 results • Page
182 of 2440
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Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
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Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Honestly, those things shouldn't result in a considerable discrepancy. The largest difference will come from the post-processing & analysi…
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Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
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