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121,961 results • Page
181 of 2440
Sort: Rank
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Votes
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1
vote
2
replies
1.1k
views
WGCNA convenience function
WGCNA
20 months ago by
fluentin44
▴ 20
21
votes
11
replies
5.0k
views
6 follow
Forum:
Rust bioinformatics projects ideas
projects
scRNA-seq
RNA-seq
Rust
updated 22 months ago by
Jeremy Leipzig
23k • written 2.6 years ago by
bompipi95
▴ 170
2
votes
3
replies
1.3k
views
Circos karyotype file
Circos
updated 22 months ago by
Ram
45k • written 22 months ago by
The_PyPanda
▴ 10
0
votes
0
replies
484
views
Low mapping after Cufflinks assembly
assembly
gffread
cuffmerge
Cufflinks
RSEM
22 months ago by
sofiablancoglez
• 0
0
votes
0
replies
551
views
News:
Course - Introduction to R Shiny
R
Data-Visualisation
Shiny
updated 22 months ago by
Ram
45k • written 22 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
499
views
KEGG module and abundance of its KEGG Orthologs for functioning
function
kegg
abundance
22 months ago by
Jonathan Yoou
▴ 70
1
vote
4
replies
1.0k
views
Deseq2 5 level condition - building contrast
rna-seq
deseq2
updated 22 months ago by
ATpoint
89k • written 22 months ago by
annaA
▴ 10
0
votes
3
replies
2.9k
views
Cannot access NCBI - Error 500
NCBI
updated 22 months ago by
Ram
45k • written 22 months ago by
Paxton
• 0
0
votes
0
replies
434
views
RNASeq vs TermSeq
RNAseq
statistics
TermSeq
22 months ago by
npb27
▴ 20
0
votes
3
replies
1.6k
views
Phylogenetic tree for my bins with abundance, genome size etc
Bins
tree
updated 22 months ago by
Mensur Dlakic
★ 30k • written 22 months ago by
aswin
• 0
0
votes
0
replies
557
views
News:
Online expert taught RNA-Seq workshop
workshop
22 months ago by
fturner
▴ 10
3
votes
2
replies
1.3k
views
use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl ids
bioservices
ensembl
python
uniprot
22 months ago by
mk
▴ 310
0
votes
0
replies
461
views
Best Preprocessing Approach for Tissue Microarray Data: Separate or Post-Merger Normalization?
normalization
array
22 months ago by
rk.khayami94
▴ 10
0
votes
1
reply
755
views
Is there a way to query Ensembl to get all 3'UTRs from all species?
python
ensembl
UTR
updated 22 months ago by
Pierre Lindenbaum
166k • written 22 months ago by
SJP
• 0
0
votes
0
replies
532
views
Interpretation of mean-variance trend in voom
EdgeR
Voom
updated 22 months ago by
Ram
45k • written 22 months ago by
Ivana
• 0
0
votes
0
replies
519
views
Pathview Enzyme Code to Gene Symbol Conversion
Pathview
KEGG
22 months ago by
B.N.
▴ 10
0
votes
3
replies
1.4k
views
Jellyfish problem with Failed to open input file 'reads.jf'
jellyfish
kmer
fastq
22 months ago by
m.t.lorenc
• 0
5
votes
1
reply
1.2k
views
Detecting somatic variants in non-tumor tissue without normals
somatic
brain
tumor
21 months ago by
manfi
▴ 20
1
vote
6
replies
1.5k
views
Problem aligning target capture sequencing of a few hundred regions to the human reference genome
GATK4
bwa-mem
target-capture-sequencing
alignment
22 months ago by
Miguel
• 0
8
votes
10
replies
2.7k
views
Can I estimate RNA velocity in Visium Spatial Gene Expression for FFPE
Visium
RNA
20 months ago by
oghzzang
▴ 50
2
votes
3
replies
4.2k
views
how to get ER, PR and HER2 data from TCGA BRCA
BRCA
TCGA
updated 22 months ago by
Ram
45k • written 5.3 years ago by
StartR
▴ 30
0
votes
3
replies
1.1k
views
ANNOVAR Error: All variants in a VCF register as "invalid genotype records in input file"
genomics
wgs
vcf
annovar
updated 22 months ago by
MatthewP
★ 1.4k • written 22 months ago by
skinny_genes
• 0
5
votes
4
replies
1.3k
views
Filter out ALT contigs from CRAM
CRAM
updated 22 months ago by
Istvan Albert
103k • written 22 months ago by
German.M.Demidov
★ 3.0k
0
votes
0
replies
728
views
Job:
PhD researcher in Systems Toxicology: connecting co-expression networks to injury and pathology. Leiden NL
WGCNA
toxicology
systems-biology
gene-network
updated 22 months ago by
colindaven
8.0k • written 22 months ago by
Giulia
• 0
0
votes
0
replies
460
views
Getting all the X associated genes of an organism
Rattus-norvegicus
neurobiology
updated 22 months ago by
Ram
45k • written 22 months ago by
Uri
• 0
0
votes
0
replies
517
views
coupling Cufflinks results with RSEM
transcript-level-quantification
RSEM
transcriptome-assembly
Cufflinks
22 months ago by
sofiablancoglez
• 0
0
votes
0
replies
934
views
Job:
PostDoc or PhD researcher: Bioinformatician in Systems Toxicology for Chemical Safety Assessment. Leiden, the Netherlands.
WGCNA
toxicology
systems-biology
gene-network
updated 22 months ago by
colindaven
8.0k • written 22 months ago by
Giulia
• 0
3
votes
0
replies
981
views
Herald:
The Biostar Herald for Monday, November 20, 2023
herald
22 months ago by
Biostar
3.6k
6
votes
6
replies
2.2k
views
6 follow
STAR alignment speed
STAR
alignment
RNA
updated 22 months ago by
ATpoint
89k • written 22 months ago by
Gilles
▴ 10
4
votes
6
replies
1.5k
views
Unexpected separation of RNA-seq samples on PCA plot
depletion
PCA
rRNA
plot
RNA-seq
22 months ago by
Tihana
▴ 10
1
vote
3
replies
913
views
Genome annotation (proving evidance from the RNA-seq raw reads)
RNAseq
genome
annotation
updated 22 months ago by
GenoMax
154k • written 22 months ago by
BenAawf
▴ 10
0
votes
0
replies
641
views
News:
Course - RNAseq in non-model organisms
Pacbio
RNA-seq
Nanopore
updated 22 months ago by
Ram
45k • written 22 months ago by
Physalia-courses
★ 2.6k
2
votes
1
reply
563
views
Extract variants from 100 000 genomes project
variants
100000-genomes-project
updated 22 months ago by
Ram
45k • written 22 months ago by
Mairena
• 0
0
votes
0
replies
502
views
NA values in conumee detail
cnv
copy-number
conumee
updated 22 months ago by
Ram
45k • written 22 months ago by
sativus
▴ 20
0
votes
1
reply
710
views
bcftools info and filter error
ExAc
bcftools
vcf
updated 22 months ago by
Ram
45k • written 22 months ago by
SI_Genomics
• 0
6
votes
2
replies
1.2k
views
How to obtain data on the specific location of the segumental duplication.
UCSC
duplication
segemental
22 months ago by
ayasu
• 0
1
vote
2
replies
890
views
How to remove batch effect in RNA-seq using control samples?
Batch-effect
RNA-seq
22 months ago by
AS20
▴ 10
0
votes
0
replies
674
views
Which of the following relationships is correct for making a hypothetical ceRNA?
cancer
lncRNA
ceRNA
RNA
miRNA
22 months ago by
mohammadhassanj
▴ 260
0
votes
2
replies
984
views
GISTIC isn't checking chromosome 23 / X
cnv
gistic
sex
chromosome
22 months ago by
penington.j
• 0
0
votes
0
replies
460
views
How to obtain full alignment results?
giraffe
vg
22 months ago by
nrqstudent
• 0
0
votes
5
replies
1.3k
views
Three questions about datasets
geo
datasets
sra
22 months ago by
SHXVRR
▴ 20
0
votes
11
replies
3.6k
views
Poly-A trimming for WGBS
Trimgalore
FastP
Poly-A
updated 13 months ago by
sunsong2024
• 0 • written 2.1 years ago by
Keem Uarren Eiryll
▴ 10
1
vote
4
replies
1.4k
views
Novaseq read coverage needed for demultiplexing
barcode
NGS
demultiplexing
sequencing
i7
updated 22 months ago by
Brian Bushnell
20k • written 22 months ago by
cassie.bishop
• 0
0
votes
1
reply
557
views
Seeking Advice on Validating RNA-Seq Data Before Differential Analysis
RNA-Seq
updated 22 months ago by
ATpoint
89k • written 22 months ago by
Tully
• 0
201
votes
46
replies
24k
views
26 follow
Forum:
Crac: Funny And/Or Weird Names For Bioinformatics Tools
humor
22 months ago by
Istvan Albert
103k
1
vote
1
reply
745
views
Model matrix confront 2 groups out of 3
modelmatrix
r
designformula
deseq2
drimseq
updated 22 months ago by
ATpoint
89k • written 22 months ago by
dylannicoembros
• 0
0
votes
5
replies
2.1k
views
6 follow
STAR ALIGNMENT
alignment-rate
updated 22 months ago by
Đặng Hải Đăng
• 0 • written 22 months ago by
Hanh
• 0
1
vote
4
replies
2.7k
views
BaseRecalibrator takes forever to run. Any suggestions?
gatk
whole exome
updated 22 months ago by
Istvan Albert
103k • written 5.7 years ago by
khorms
▴ 230
15
votes
20
replies
4.4k
views
Bbtools callvariant multisample mode, + base recalibration
Bbtools
22 months ago by
Axzd
▴ 80
0
votes
0
replies
457
views
TSSAR and TSSpredator
sRNA
TSS
22 months ago by
Sado
• 0
121,961 results • Page
181 of 2440
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Answer: Differences between published differential gene expression results and own analy
Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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Answer: Tools to simulate Illumina short read sequences and ONT long reads with a refere
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Comment: Differences between published differential gene expression results and own analy
by
dsull
★ 7.7k
Honestly, those things shouldn't result in a considerable discrepancy. The largest difference will come from the post-processing & analysi…
Answer: Differences between published differential gene expression results and own analy
by
Ales
▴ 50
I second the comment about comparing the top 100 genes - if you see vastly different results, I would lean closer to examining protocols th…
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I think what you are asking involves too much work for anyone to explain it in granular detail. But who knows, maybe there is a good soul o…
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When you say vastly different, what do you mean exactly? Does your top 100 up/down not match theirs at all?
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Have a look at tools like SnpEff or Ensembl VEP. Perhaps your bacterial sp is included.
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Yes, I already made the transcriptome with these tools, and the CD-HIT-EST fasta file is the transcript file that I am using for RSEM. Then…
Comment: sra-explorer : find SRA and FastQ download URLs in a couple of clicks
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Human genome, ideally hg38
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Got it https://kb.10xgenomics.com/hc/en-us/articles/115004506263-What-is-a-barcode-inclusion-list-formerly-barcode-whitelist
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