updated 2.3 years ago by
Rory Stark
★
2.1k
•
written 2.3 years ago by
B.N.
▴
10
1
vote
4
replies
1.7k
views
0
votes
1
reply
860
views
updated 2.3 years ago by
Rory Stark
★
2.1k
•
written 2.3 years ago by
B.N.
▴
10
2
votes
1
reply
1.3k
views
updated 2.3 years ago by
Rory Stark
★
2.1k
•
written 2.3 years ago by
Chris
▴
360
9
votes
17
replies
5.1k
views
updated 2.2 years ago by
Rory Stark
★
2.1k
•
written 2.3 years ago by
Chris
▴
360
0
votes
2
replies
1.6k
views
0
votes
1
reply
744
views
1
vote
3
replies
1.3k
views
updated 2.3 years ago by
biofalconch
★
1.3k
•
written 2.3 years ago by
wyt1995
▴
40
1
vote
3
replies
1.9k
views
0
votes
0
replies
832
views
2.3 years ago by
joonhong kwon
▴
70
7
votes
11
replies
3.3k
views
0
votes
0
replies
881
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
rijan_dhakal
▴
10
1
vote
8
replies
1.8k
views
0
votes
1
reply
814
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
qudrat.nii
▴
40
0
votes
2
replies
1.2k
views
1
vote
2
replies
1.4k
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
Ming Tommy Tang
★
4.7k
8
votes
9
replies
3.1k
views
0
votes
1
reply
795
views
0
votes
0
replies
1.0k
views
2
votes
3
replies
1.1k
views
0
votes
2
replies
1.2k
views
1
vote
3
replies
1.3k
views
0
votes
0
replies
651
views
updated 2.3 years ago by
GenoMax
154k
•
written 2.3 years ago by
subashini.fbtpb106
▴
20
7
votes
10
replies
2.9k
views
2.3 years ago by
firefox91
•
0
0
votes
2
replies
2.4k
views
1
vote
5
replies
1.7k
views
1
vote
3
replies
1.4k
views
1
vote
0
replies
1.1k
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
Ming Tommy Tang
★
4.7k
0
votes
1
reply
1.1k
views
updated 2.3 years ago by
Trivas
★
1.9k
•
written 2.3 years ago by
james.zhang20
▴
10
0
votes
0
replies
556
views
0
votes
0
replies
527
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
faravarkhordadpoor
•
0
2
votes
8
replies
2.5k
views
3
votes
5
replies
7.9k
views
7 follow
updated 2.3 years ago by
Charles-Alexandre Roy
▴
70
•
written 9.4 years ago by
lien
▴
90
1
vote
2
replies
2.7k
views
updated 2.3 years ago by
Ming Tommy Tang
★
4.7k
•
written 2.3 years ago by
Matt01
•
0
0
votes
0
replies
539
views
updated 2.3 years ago by
GenoMax
154k
•
written 2.3 years ago by
BioinfoBee
•
0
3
votes
6
replies
2.1k
views
0
votes
1
reply
1.0k
views
0
votes
2
replies
710
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
Neeraj Kumar Singh
•
0
0
votes
1
reply
696
views
0
votes
0
replies
513
views
0
votes
0
replies
782
views
updated 2.3 years ago by
Ram
45k
•
written 2.3 years ago by
Physalia-courses
★
2.6k
0
votes
2
replies
1.1k
views
2.3 years ago by
melissachua90
▴
70
3
votes
5
replies
1.9k
views
0
votes
3
replies
4.5k
views
updated 2.3 years ago by
Joe
22k
•
written 2.3 years ago by
sanfrancisco8101
•
0
0
votes
0
replies
684
views
6
votes
13
replies
17k
views
8 follow
4
votes
8
replies
2.6k
views
0
votes
1
reply
1.0k
views
updated 2.3 years ago by
LauferVA
4.8k
•
written 2.3 years ago by
shakyaram079
•
0
0
votes
1
reply
1.7k
views
2.3 years ago by
gernophil
▴
130
10
votes
15
replies
3.0k
views
2.3 years ago by
Chris
▴
360
0
votes
3
replies
1.4k
views
Recent Votes
Recent Locations •
All
United States, just now
Frankrike, 6 minutes ago
Loretto, PA, USA, 9 minutes ago
Germany, 10 minutes ago
Sweden, 13 minutes ago
Turkey, 21 minutes ago
Bologna, 28 minutes ago
Recent Awards •
All
Popular Question to
AellSidious
•
0
Popular Question to
Apprentice
▴
190
Scholar to
yura.grabovska
▴
830
Popular Question to
Assa Yeroslaviz
★
1.9k
Popular Question to
curious
▴
890
Recent Replies
Comment: GUI commercial software for 10x single cell gene expression analysis
by
GenoMax
154k
> Single-cell analysis is a complex topic and it's easy to make wonky conclusions from wonky analysis.
Let us not veer into a discussion o…
Comment: How much coverage is needed for high-quality phylogenetic and admixture analyses
by
colindaven
8.0k
How much short read coverage do other studies have which you want to replicate? Are those studies using whole genomes creating using long r…
Comment: GUI commercial software for 10x single cell gene expression analysis
by
firestar
★
1.7k
They have 10X cellranger output (ie; counts). They want to perform the standard sort of Seurat/Scanpy analyses: QC, filtering, integration,…
Comment: GUI commercial software for 10x single cell gene expression analysis
by
yura.grabovska
▴
830
Can you provide more information on the use case? If they want to generate data for a publication I would argue that the majority of the GU…
Comment: tximport error (medianLengthOverIsoform)
by
LGG
•
0
I believe using `ignoreTxVersion = TRUE` is supposed to take care of that
Answer: Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2
by
tungsega
▴
10
Just a very brief summary of the results using the latest versions of minimap2 and winnowmap (by `samtools stats`).
It seems that winnowma…
Comment: Quantification using salmon in alignment-based mode after minimap2 run
by
Assa Yeroslaviz
★
1.9k
great response. thank for mentioning this one. Ill definitely try oarfish. would you recommend running it with the raw sequencing files or…
Comment: Quantification using salmon in alignment-based mode after minimap2 run
by
Assa Yeroslaviz
★
1.9k
Thanks for the comment. I am aware of the workflow. I saw they use StringTie for quantification. I've had good experience with the pseudo-a…
Answer: Nextflow: How to format input tuple for STAR_ALIGN process with STAR index direc
by
DdogBoss
▴
20
I needed to be aware of queue channels which you can read about here:
https://training.nextflow.io/2.0/basic_training/channels/#queue-c…
Comment: Errors with RSEM/bowtie2
by
Olivia
•
0
I am looking back now, and it appears that the files processed after kmer correction (rcorrector) seem to match up, except the first sample…
Answer: GUI commercial software for 10x single cell gene expression analysis
by
GenoMax
154k
Cloud solution: Partek Flow (going to be called Illumina Multiomics at some point soon, Partek was purchased by Illumina a couple of years …
Answer: how to respond that my research does not have experimental validation
by
Mensur Dlakic
★
30k
People publish predictive papers all the time that have zero experimental support. There are different degrees of "lacking experimental val…
Comment: how to respond that my research does not have experimental validation
by
ATpoint
89k
You should give the reviewer something. An independent way of in silico validation, other supporting analysis. Just "no" might lead to reje…
Answer: Which aligner is more suitable for ONT R10.4.1 Dorado-corrected reads: minimap2
by
okiedokie1208
▴
40
I believe ONT recommends Minimap2. This is also the default tools in their EPI2ME workflow.
Comment: how to respond that my research does not have experimental validation
by
rfran010
★
1.7k
Yes, and if you are going to mention that experimental validation is not possible or outside the scope of your paper, kindly remind the rev…
Traffic: 3426 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6