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122,013 results • Page
297 of 2441
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
1.0k
views
Design matrix in limma
Limma
R
2.6 years ago by
Nai
▴ 50
0
votes
6
replies
1.8k
views
cblaster didn't create .dmnd out file???????
blast
2.6 years ago by
Neel
▴ 20
0
votes
0
replies
706
views
bamComparing ChIp-Seq samples with strange coverage between chipped and Input
normalization
bamCompare
deepTools
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
Assa Yeroslaviz
★ 1.9k
1
vote
2
replies
1.1k
views
Incorrect gvcfServerPath for reference genome
PHG
2.7 years ago by
wcs98
• 0
0
votes
1
reply
667
views
Relation of the number of contigs to the real DNA abundance before sequencing
contig
updated 2.7 years ago by
GenoMax
154k • written 2.7 years ago by
P
• 0
0
votes
2
replies
883
views
Installing EVcouplings in my ubuntu system locally (command line)
Evolutionary
Protein
interaction
couplings
2.7 years ago by
Peerzada
▴ 10
17
votes
8
replies
43k
views
8 follow
How to read vcf file in python?
vcf
reader
python
updated 2.7 years ago by
BCArg
▴ 90 • written 5.8 years ago by
ja4123
▴ 30
0
votes
1
reply
922
views
10x genomics hashtag antibody (biolegend)
Biolegend
hashtag
antibody
scRNAseq
10x
genomics
updated 2.7 years ago by
ATpoint
89k • written 2.7 years ago by
jhy
▴ 10
0
votes
1
reply
962
views
Ligand-receptor interaction tool
binding
Protein
ligand
pymol
carbohydrate
2.7 years ago by
Hansen_869
▴ 80
2
votes
1
reply
871
views
Renormalize after row/column deletion from TPM data in RNA-seq
normalization
TPM
RNA-seq
updated 2.7 years ago by
ATpoint
89k • written 2.7 years ago by
Gene_MMP8
▴ 240
6
votes
4
replies
1.7k
views
How to install `BETA` on linux server?
ChIP-seq
BETA
updated 2.7 years ago by
ATpoint
89k • written 2.7 years ago by
Dan
▴ 180
0
votes
0
replies
602
views
Estimating timing of admixture
event
Inference
Hybrids
Generations
since
admixture
2.7 years ago by
Matteo
▴ 10
0
votes
0
replies
621
views
CyTOF FlowCore Catalyst Question
R
and
Flow
CyTOF
2.7 years ago by
yang.zhizhang
▴ 10
1
vote
2
replies
998
views
How should I interpret FB_Plot in microarray analysis?
microarray
analysis
control
quality
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
Nemo
• 0
8
votes
7
replies
1.9k
views
6 follow
How should I deduce the variance and expectation of the logarithm of a variable in the `voom` paper?
Biostatistics
voom
limma
2.7 years ago by
Dan
▴ 180
1
vote
2
replies
850
views
WholeGenomeMultiChromosome.pl script download
perl
protein
six
translation
frame
2.7 years ago by
vijinim
▴ 100
0
votes
1
reply
984
views
Finding dbSNP 129 rsIDs for lifting over hg18 sumstats to hg38
Hg18
Sumstats
dbSNP
Genome
build
2.7 years ago by
marcelofrancia
• 0
19
votes
11
replies
4.6k
views
Unable to Create Index file of VCF
VCF
updated 13 months ago by
GenoMax
154k • written 2.7 years ago by
anasjamshed
▴ 140
8
votes
7
replies
1.7k
views
Multisamples in callvariants with callvariants.sh
bbtools
callvariants
2.7 years ago by
Hayler Edu
▴ 40
5
votes
5
replies
6.4k
views
Forum:
Bioinformatics - how to start?
molecular-biology
updated 2.7 years ago by
Mensur Dlakic
★ 30k • written 2.7 years ago by
Abigail
• 0
1
vote
3
replies
1.5k
views
Alternatives to Lollipop for virus variant data
mutation-plot
amino-acid
lollipops
updated 2.7 years ago by
GenoMax
154k • written 2.7 years ago by
ch504
▴ 10
1
vote
0
replies
1.4k
views
Lambda GC, genomic inflation and REGENIE
genomic-inflation
REGENIE
lambda
GC
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
Zhiyi
▴ 20
1
vote
1
reply
702
views
samtools missin
samtools
galaxy
dunovo
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
mokbel73
• 0
4
votes
1
reply
973
views
TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq
adapters
Truseq
BLAST
updated 2.7 years ago by
ATpoint
89k • written 2.7 years ago by
e.r.zakiev
▴ 260
1
vote
11
replies
4.8k
views
bedtools fisher interpretation of "in -a" "not in -b"
fisher
bedtools
intersection
updated 2.7 years ago by
Ram
45k • written 7.6 years ago by
jomo018
▴ 730
1
vote
2
replies
1.0k
views
No counts in my RNA-seq data
sRNA
e.coli
2.7 years ago by
demoraesdiogo2017
▴ 120
2
votes
4
replies
3.1k
views
How to convert Seurat object to sce object retaining the HVG
HVG
single-cell
SingleCellExperiment
seurat
updated 2.1 years ago by
Hamid Ghaedi
3.3k • written 2.7 years ago by
paria
▴ 110
0
votes
0
replies
429
views
Comparing Sets of Correlations
Correlation
single-cell
Hypothesis-Testing
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
kmeng
• 0
0
votes
2
replies
952
views
What is read depth exactly?
wgs
wes
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
MobiusT
▴ 20
4
votes
8
replies
2.5k
views
Modeling RNAseq batch effects using a non-case/control technical replicate
batch-correction
batch-effect
RNA-seq
updated 2.7 years ago by
jared.andrews07
★ 19k • written 2.7 years ago by
Chris Miller
22k
4
votes
16
replies
3.1k
views
Error in VQSR first step
NGS
WES
VQSR
variant
2.6 years ago by
Yoosef
▴ 60
0
votes
1
reply
985
views
Can't change layout for new networks in py4cytoscape?
Cytoscape
py4cytoscape
updated 2.7 years ago by
Scooter
▴ 310 • written 2.7 years ago by
Harris
• 0
2
votes
1
reply
1.5k
views
Timeout error using Biomart to get gene lengths
r
biomart
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
AlexStar
▴ 200
2
votes
1
reply
702
views
Bioinformatics tool to validate the functional annotation
functional-annotation
genomics
fungi
updated 2.7 years ago by
Ram
45k • written 2.7 years ago by
Debut
▴ 20
0
votes
2
replies
1.0k
views
Merging VCF with bcftools, problems with INFO column when using tapes with merged vcf.
bcftools
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
brunomiwa
• 0
2
votes
10
replies
3.7k
views
convert single bam file to VCF format
vcf
bam
bcftools
updated 2.7 years ago by
Randy H
▴ 110 • written 2.7 years ago by
Human
• 0
4
votes
10
replies
3.2k
views
imputing haplotypes from variants in a VCF file - vcfIndexFile
vcf
imputation
PHG
updated 2.6 years ago by
matt.shenton
• 0 • written 2.7 years ago by
matt.shenton
▴ 40
0
votes
0
replies
450
views
CABSDock issue:string index out of range
CABSDock
ubuntu
2.7 years ago by
Farha
• 0
0
votes
2
replies
974
views
how to seperate VEP INFO column into seperate columns
vcf
bcftools
vep
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
minoo
▴ 10
1
vote
1
reply
891
views
Chado DBD::Pg::st execute failed: ERROR
chado
updated 2.4 years ago by
Ram
45k • written 2.7 years ago by
Marcos
▴ 10
0
votes
0
replies
590
views
Where can I find Chimpanzee (Pan troglodytes) VCF file with rsIDs
rsID
chimp
genomics
VCF
2.7 years ago by
bioinfo@05
• 0
1
vote
3
replies
1.3k
views
How to find the difference between old and current releases in UniprotKB
previous
UniprotKB
current
difference
releases
updated 2.7 years ago by
Elisabeth Gasteiger
★ 2.4k • written 2.7 years ago by
Mohan
• 0
0
votes
2
replies
1.3k
views
GIAB and GRCh38 SV/CNV
benchmarking
2.7 years ago by
German.M.Demidov
★ 3.0k
1
vote
0
replies
643
views
Default placeholder for missing fields doesn't work with block in xtract tool
bash
nbci-tools
xtract
2.7 years ago by
Crunk
▴ 10
0
votes
1
reply
763
views
Calling zero mapping quality variant
calling
GATK
variant
updated 2.7 years ago by
lacb
▴ 120 • written 2.7 years ago by
sonsunjirachote
• 0
1
vote
1
reply
709
views
Font name used in dittoSeq?
single-cell
RNAseq
updated 2.7 years ago by
fracarb8
★ 1.7k • written 2.7 years ago by
Noora
▴ 10
5
votes
5
replies
5.0k
views
bcftools isec output for multiple vcf files interpretations
bcftools
mutect2
variant-calling
gatk
updated 2.3 years ago by
Ram
45k • written 2.7 years ago by
minoo
▴ 10
0
votes
1
reply
1.1k
views
Issues with clusterProfiler and WikiPathways
clusterProfiler
updated 2.7 years ago by
cfos4698
★ 1.2k • written 2.7 years ago by
miccoli.andrea89
• 0
0
votes
2
replies
978
views
looking for a tool to obtain DNA/prot alignment with introns, c.# and p.#
alignment
DNA-prot
2.7 years ago by
vvasta
• 0
1
vote
5
replies
1.4k
views
translate CDS to prot formatted with nt nubers
translate
updated 2.4 years ago by
Ram
45k • written 2.7 years ago by
vvasta
• 0
122,013 results • Page
297 of 2441
Recent Votes
A: Bam And Indexed Bam Files
Answer: How to create a phylogenetic tree from 30 VCF files
Comment: Reading AD and other genotype information from the VCF file
Answer: 1 vs 1 DEG analysis in scrna seq data
Comment: installation of package ‘DESeq2’ had non-zero exit status
Answer: Recommendations for 200 SNP markers genotyping
Comment: Reasonable number of SNPs in a bacterial genome.
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Answer: 1 vs 1 DEG analysis in scrna seq data
by
ATpoint
89k
The only option you have is to treat every single cell as a replicate. That has the obvious downside that any effect can be a donor-unique …
Answer: GUI commercial software for 10x single cell gene expression analysis
by
firestar
★ 1.7k
An open-source option: [kana](https://www.kanaverse.org/kana/).
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
• 0
Yes, we plan to make English the primary language of the Brave UI.
Comment: Reasonable number of SNPs in a bacterial genome.
by
michael.ante
★ 4.0k
If your bacterial species is a (human) pathogen, you might want to check outbreak analysis papers of that species. In general, you find t…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
lieven.sterck
16k
ok, missed that ... in any case that should not happen indeed. How did you determine that the files are not equal? I can indeed also see t…
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Ram
45k
Do you have a plan to make an English version of the UI?
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
Edward
• 0
This can visualize the parameters of the generated workflow, software, and scripts, and manage the docker process of the script, software, …
Comment: Brave: Bioinformatics Reactive Analysis and Visualization Engine
by
ATpoint
89k
Can you summarize in one sentence what the use case is? Is this a workflow manager?
Comment: Pseudogene - scarce info
by
ATpoint
89k
This reminds me strongly on my "masters" courses (doesn't deserve that name tbf). "Here is some poorly-described project with little to no …
Answer: scVI vs Harmony, which is better for cell type based clustering in brain tissue?
by
ATpoint
89k
There is no "better" is my experience. It always depends on the dataset. Try both and integrate your biological knowledge to decide which m…
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴ 190
I just wrote that I misunderstood your initial question.
Comment: DESeq2 on metagenome KO counts
by
Aleksandra
▴ 190
What exactly did I not get?
Comment: Interpreting genomic features distribution for CUT&RUN peaks
by
rfran010
★ 1.7k
If I understand correctly, you see increased signal at TSS sites compared to control (taller peaks in browser). However, 92% of the 450 siS…
Comment: combine VCF from diploid reference/haplotypes for the same sample
by
cmdcolin
★ 4.3k
this question is a little similar to your previous question (https://www.biostars.org/p/9614638/). just as added info, here is a tool calle…
Comment: hisat2 error-Paired end reads not equal or lack of RAM/disk space?
by
aj123
▴ 130
As mentioned above, I just got the raw fastq files from the ftp site listed.
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