Limit : all time
all time today this week this month this year
121,907 results • Page 36 of 2439
Sort: Rank
Rank Views Votes Replies
5
votes
3
replies
712
views
Bcftools extracting list of markers by chr and pos
bcftools
updated 7 months ago by 45k • written 7 months ago by ▴ 60
1
vote
1
reply
405
views
differential gene expression in male and female samples
CLCworkbench RNAseq
updated 7 months ago by 89k • written 7 months ago by • 0
0
votes
0
replies
391
views
News: Online Course: Machine Learning Methods for Longitudinal Data with Python
Longitudinal-Data Machine-Learning Deep-Learning Omics
updated 7 months ago by 45k • written 7 months ago by ★ 2.6k
0
votes
1
reply
501
views
Issue with Converting Excel Data to JSON
python classifier json machine-learning
updated 7 months ago by ★ 4.0k • written 7 months ago by • 0
4
votes
4
replies
758
views
Nanopore DRS data
m6A PolyA-tail DRS Nanopore
updated 7 months ago by 153k • written 7 months ago by ▴ 60
0
votes
1
reply
571
views
Figures and plots for integration of ATAC and RNA seq data
ATAC-seq RNA-seq
updated 7 months ago by ★ 19k • written 7 months ago by • 0
1
vote
1
reply
513
views
Issue with picard index in my one chr reference fasta file
SamToFastq
7 months ago by Manuel ▴ 50
0
votes
0
replies
405
views
News: course: Generalised Linear Models in R - Online, 24–28 February.
R Generalised-Linear-Models GLM
updated 7 months ago by 45k • written 7 months ago by ★ 2.6k
1
vote
1
reply
518
views
News: Seafood Genomics course - Online, February 25-28
qPCR Genomic-Traceability Nanopore Seafood-Genomics
updated 7 months ago by 23k • written 7 months ago by ★ 2.6k
0
votes
8
replies
1.1k
views
Bowtie2 keeps exiting with "Error reading _plen[] array:"
bowtie2
updated 7 months ago by 153k • written 7 months ago by • 0
1
vote
2
replies
846
views
How to Generate tissue_lowres_image.png from tissue_hires_image.png for spatial transcriptomics?
seurat spatial-transcriptomics
updated 7 months ago by 45k • written 7 months ago by • 0
0
votes
0
replies
780
views
Job: Ad Astra Fellow – Assistant Professor of Artificial Intelligence in Medical Data Analytics
data-analytics assistant-professor medicine AI
7 months ago by Colm • 0
0
votes
0
replies
323
views
XP-CLR input files
XPCLR
updated 7 months ago by 153k • written 7 months ago by • 0
1
vote
7
replies
2.6k
views
Convert VCF files to input file format requiered by XP-CLR1.0 software
XP-CLR
updated 7 months ago by • 0 • written 2.5 years ago by ▴ 30
0
votes
3
replies
751
views
Whether personalized pangenome considers allele frequency
pangenome vg
7 months ago by Wang Cong ▴ 20
2
votes
1
reply
709
views
High Variability when Peak Calling with SEACR
MACS2 SEACR ChIP
updated 7 months ago by ★ 19k • written 7 months ago by • 0
1
vote
1
reply
435
views
Blog: Molecular Simulation: GROMACS Benchmark on 30 different GPUs on SaladCloud
Benchmark GPU Cloud
7 months ago by Prashanth ▴ 10
0
votes
1
reply
1.0k
views
Job: Job: Bioinformatics Postdoc Position at Columbia University
aging single-cell
7 months ago by Qinghua • 0
3
votes
7
replies
1.8k
views
Speed up umap parameter optimisation?
rna-seq umap r
updated 7 months ago by ★ 19k • written 7 months ago by ▴ 40
0
votes
1
reply
569
views
Eigencor plot after limma::removeBatchEffect
DESeq2 PCAtools
updated 7 months ago by ★ 19k • written 7 months ago by • 0
0
votes
2
replies
571
views
Error in running MToolBox
NGS Variant-Calling MToolBox Mitochondria
7 months ago by adarsh ▴ 60
1
vote
3
replies
593
views
Extract reads that didn't contribute to miRNAs following miRDeep2 analysis
miRNA miRDeep2 small RNA
updated 7 months ago by 153k • written 7 months ago by ▴ 40
0
votes
3
replies
787
views
Should I Use p-value or Adjusted p-value for Differential Methylation Analysis (Illumina EPIC v2)?
DNAMethylation IlluminaEPICv2 DifferentialMethylationAnalysis
updated 7 months ago by 22k • written 7 months ago by ▴ 20
0
votes
1
reply
512
views
MuSE sump: Segmentation fault (core dumped)
error MuSE core somatic sump dump
updated 7 months ago by 3.4k • written 7 months ago by • 0
0
votes
1
reply
623
views
Unicycler error
human illumina libraries unicycler
updated 7 months ago by 3.4k • written 7 months ago by ▴ 10
4
votes
1
reply
1.3k
views
Job: (Open to Volunteer/Unpaid Roles) Entry-Level Computational Biologist Seeking Internship
scRNA internship transcriptomics single-cell
7 months ago by Haziq ▴ 20
1
vote
0
replies
433
views
Tool: ggalign: Bridging the Grammar of Graphics and Biological Multilayered Complexity
ggplot2 ggalign
updated 7 months ago by 153k • written 7 months ago by ▴ 70
0
votes
2
replies
436
views
Sample replicate for transcriptomic
replicate transcriptomic Sample magna daphnia
7 months ago by Jane • 0
0
votes
0
replies
295
views
CIBERSORTx error when running sc-RNA seq reference dataset
cibersortx cibersort
7 months ago by zhbyrd • 0
0
votes
0
replies
349
views
Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2 shotgun
BOLD Qiime2 Taxonomy Assignment Kraken2
7 months ago by ohtang7 ▴ 40
3
votes
3
replies
703
views
STAR: same read is shown as 'multi-mapping' to the same location of the genome
samtools STAR RNAseq
updated 7 months ago by 15k • written 7 months ago by ▴ 10
0
votes
0
replies
244
views
Reconstruction of ancestral phenotypes
phenotypes
7 months ago by 1473989647 • 0
0
votes
0
replies
294
views
Help understanding best binning practices
binning viruses metagenome contigs
7 months ago by boone5jones • 0
2
votes
6
replies
1.1k
views
ERROR: SAM file generated by BWA is corrupted and cannot be processed with SAMTOOLS
samtools bwa NGS alignment sam
updated 7 months ago by ★ 1.3k • written 7 months ago by • 0
3
votes
4
replies
636
views
Breaking my 400MB gtf gile into 8 seperate 50MB gtf files
gtf
6 months ago by Ezekiel ▴ 10
0
votes
2
replies
444
views
PDX RNA seq counts
counts RNAseq PDX
7 months ago by ChumBucket2024 ▴ 10
1
vote
2
replies
618
views
Machine learning for drug sensitivity prediction and signature gene
Machine-learning drug-sensitivity
7 months ago by qudrat.nii ▴ 40
3
votes
1
reply
548
views
Filter SAM file for read pairs that align on same strand
samtools alignment sam
updated 7 months ago by 166k • written 7 months ago by ▴ 90
5
votes
3
replies
1.1k
views
Seeking Access to Large-Scale Population Genomics Datasets for VCF Data Analysis
populationgenomics genomes vcf genomics
updated 7 months ago by • 0 • written 8 months ago by ▴ 40
3
votes
1
reply
503
views
Missing variants in chrMT Phase3
mutation VCF 1000genomes Mitochondria
updated 7 months ago by 45k • written 7 months ago by • 0
0
votes
0
replies
309
views
pseudobulks on patch-seq
edgeR patch-seq DESeq2 pseudobulks
7 months ago by yves33 • 0
0
votes
1
reply
518
views
How to obtain spliced and unspliced counts from parse biosciences generated count data ?
scrnaseq transcriptomics single-cell
updated 7 months ago by 6.5k • written 7 months ago by ▴ 10
1
vote
4
replies
562
views
Select one microarray probe for gene (Affymetrix) - tools 2025?
Probes Microarray
7 months ago by Nona ▴ 90
0
votes
1
reply
528
views
Picard AddOrReplaceReadGroups,
human illumina libraries picard
updated 7 months ago by 166k • written 7 months ago by ▴ 10
0
votes
0
replies
290
views
CellChat interactions
R CellChat
7 months ago by solo.albif • 0
0
votes
1
reply
627
views
Data Normalization of RNA-seq gene expression
TMM classification MetastasisRNA-Seq
updated 7 months ago by 45k • written 7 months ago by ▴ 20
2
votes
3
replies
829
views
GTF file generated by stringtie merge has two source ensemble and stringtie
merge stringtie
updated 7 months ago by 22k • written 7 months ago by • 0
2
votes
5
replies
808
views
Filter duplicates with picard
human illumina libraries picard
updated 7 months ago by 166k • written 7 months ago by ▴ 10
1
vote
7
replies
936
views
Which Tool and Database for metagenomic classification at Species level with 16S
Taxonomy 16S Amplicon Metagenomic
7 months ago by Aytaç • 0
0
votes
1
reply
355
views
Converting SRA Data to FASTQ and Saving Directly to S3
sra-toolkit AWS SRA S3
updated 7 months ago by 153k • written 7 months ago by • 0
121,907 results • Page 36 of 2439
Recent Votes
Answer: Tried building a compact sequence format with 4-bit storage
Tried building a compact sequence format with 4-bit storage
Shift in RNA 3' position, Term-Seq vs RNASeq
Comment: STARlong for pacbio Isoseq reads
Comment: Automatically annotating a feature using a genbank file
Answer: Is this PCA plot correct??
Answer: Is this PCA plot correct??
Recent Locations • All
United States, 6 minutes ago
United Kingdom, 19 minutes ago
France, 29 minutes ago
UCLA, 37 minutes ago
Taiwan, 54 minutes ago
Norway, 1 hour ago
United Kingdom, 1 hour ago
Recent Awards • All
Popular Question to Pranava ▴ 10
Popular Question to ramiro.barrantes ▴ 60
Popular Question to npb27 ▴ 10
Popular Question to Apprentice ▴ 190
Popular Question to pranavdatar01 • 0
Popular Question to Matteo Ungaro ▴ 130
Popular Question to mbramble • 0
Recent Replies
Comment: Hifiasm is getting killed while trying to assemble a genome by Panos ★ 1.8k
Why don't you subsample your HiFi reads and try running hifiasm again? Maybe this will help if you have memory problems. However, I haven't…
Comment: Is total miRNA in EV constant? Implications for library size normalization. by Gordon Smyth ★ 8.3k
RNA-seq is very good at relative analyes. It would be straightforward to determine which miRNAs are relatively more abundant, compared to o…
Comment: Tried building a compact sequence format with 4-bit storage by Pranava ▴ 10
Woah!!! Thank you very much, Matthias. I honestly didn't even know some of those existed and I will definitely go through them and try to u…
Answer: Tried building a compact sequence format with 4-bit storage by Matthias Zepper 5.1k
Hello Pranava, Thanks for sharing your repository. Devising a new file format is an interesting undertaking and certainly a task with many…
Answer: Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio) by GenoMax 153k
`LOC` gene ID's are often assigned to uncharacterized genes and you may not get useful information from databases for them, thus they will …
Comment: Whole Genome Sequencing IG regions by GenoMax 153k
> are the calls I am seeing reliable or should I take them with something of a pinch of salt? Not sure what calls you are referring to but…
Comment: RNA-SEQ where only a subset of genes is of interest by piffelpaff • 0
Sorry to revive this ancient thread but I'm currently discussing the same question with some people in my lab and would love to somebody po…
Answer: STARlong for pacbio Isoseq reads by YuZJ • 0
Hello, you may try deSALT (DOI: 10.1186/s13059-019-1895-9, GitHub: ydLiu-HIT/deSALT) or uLTRA (DOI: 10.1093/bioinformatics/btab540, GitHub:…
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq by acvill ▴ 350
Without knowing the details of the Term-seq method, could the 38 nt shift be accounted for by the difference in the position of the ribosom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
Thanks, I'll give it a try.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
Comment: STARlong for pacbio Isoseq reads by Buffo ★ 2.4k
The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
Comment: Getting just fastqc.zip file? by GenoMax 153k
Yes, You can either use it on command line or use the graphical user interface.
Comment: STARlong for pacbio Isoseq reads by GenoMax 153k
What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue. I assume …
Comment: Getting just fastqc.zip file? by pourhangleila95 • 0
I want to perform fastQC on my data.Do you use fastQC software for doing it?
Traffic: 3405 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6