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121,912 results • Page
57 of 2439
Sort: Rank
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Votes
Replies
0
votes
0
replies
477
views
EU-Seq Differentially expressed transcripts
EU-Seq
Seq
nascent
RNA
10 months ago by
Bruno
• 0
0
votes
0
replies
737
views
Job:
Seeking remote internship/job
spain
remote
europe
portugal
10 months ago by
Guilherme
• 0
0
votes
4
replies
1.1k
views
How to interpret WebGestalt plots for GSEA and ORA?
webgestalt
gsea
ora
10 months ago by
Haad
• 0
0
votes
1
reply
530
views
PacBio RNAseq Isoseq Pipeline question
Isoseq
Pipeline
PacBio
RNAseq
updated 10 months ago by
GenoMax
153k • written 10 months ago by
evan.kransdorf
• 0
3
votes
4
replies
7.4k
views
Cellcyclescoring did not work in Seurat V5
Seurat
single-cell
updated 10 months ago by
Bastien Hervé
6.5k • written 22 months ago by
synat.keam
▴ 120
1
vote
2
replies
854
views
Getting cds files from ncbi using accession numbers
fasta
cds
ncbi
updated 10 months ago by
Ram
45k • written 10 months ago by
lily
• 0
1
vote
1
reply
592
views
split gamp by chromosome or extract specific regions.
vg
updated 10 months ago by
Jordan M Eizenga
▴ 760 • written 10 months ago by
Juhyun
• 0
5
votes
6
replies
1.1k
views
ggplot with ORR in y axis
ggplot
10 months ago by
Nona
▴ 90
0
votes
0
replies
389
views
Phasing haplotypes from the crosses
gatk
snps
phasing
haplotypes
10 months ago by
ayeraselvan
▴ 10
0
votes
1
reply
479
views
Extract bacterial SNP from PATRC
SNPs
genomes
PATRIC
bacterial
updated 10 months ago by
GenoMax
153k • written 10 months ago by
Jennifer
• 0
1
vote
7
replies
1.2k
views
Gene expression at 0 in single cell experiments
seurat
single-cell
updated 10 months ago by
Ram
45k • written 10 months ago by
Gerard
▴ 20
1
vote
0
replies
388
views
Extract all protein-coding genes from TxDb.
R
Granges
IRanges
Txdb
10 months ago by
octpus616
▴ 120
0
votes
0
replies
521
views
Job:
Postdoc in reproductive genetics, University of Gothenburg, Sweden
bioinformatics
computational-biology
genetics
postdoc
updated 10 months ago by
Ram
45k • written 10 months ago by
pol.sole.navais
▴ 10
12
votes
19
replies
3.4k
views
Snakemake error
SnakeMake
10 months ago by
aUser
▴ 80
0
votes
0
replies
530
views
Job:
Assistant Professor of Computational Molecular Biology
molecular
biology
10 months ago by
UCSDBioSci
▴ 30
0
votes
0
replies
407
views
Skilled occupation list austrlia
Australia
10 months ago by
anasjamshed
▴ 140
0
votes
1
reply
459
views
T2T assembly supporting tools
telomere
t2t
assembly
genome
10 months ago by
eva_u
▴ 30
9
votes
12
replies
2.6k
views
Is a SLURM job array submission suitable for parallelizing multiple FASTQ file downloads?
parallel-computing
HPC
SLURM
FASTQ
updated 10 months ago by
Dave Carlson
★ 2.2k • written 10 months ago by
kalavattam
▴ 380
0
votes
1
reply
804
views
Cut&Run: E-coli spike-in
normalization
cut-and-run
updated 10 months ago by
Ram
45k • written 10 months ago by
kim
• 0
0
votes
0
replies
456
views
Issues using reduceSimMatrix with a custom annotation
enrichment
GO
GOsemsim
rrvgo
annotationForge
10 months ago by
daccar98
• 0
0
votes
2
replies
1.1k
views
Perform DESeq2 with One factor with three levels vs Two factor with two levels
DESeq2
updated 10 months ago by
swbarnes2
15k • written 10 months ago by
وفاء
• 0
2
votes
7
replies
1.2k
views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes
RNASeq
updated 10 months ago by
i.sudbery
22k • written 10 months ago by
brayas13
• 0
1
vote
4
replies
2.5k
views
nf-core/rnaseq, problem with ensembl reference
nfcore
nextflow
ensembl
rnaseq
updated 10 months ago by
Kai
• 0 • written 18 months ago by
Filip
▴ 10
0
votes
0
replies
428
views
VG STATS: 2000 Properly Paired Inquiry
samtools
variation-graph
sequencing
vg
updated 10 months ago by
Ram
45k • written 10 months ago by
abdelf6
• 0
0
votes
0
replies
307
views
Database for peptide drugs
database
10 months ago by
Jiayi Yang
• 0
2
votes
3
replies
1.4k
views
identify transposable elements in iso-seq data
TE
iso-seq
RepeatMasker
updated 10 months ago by
lieven.sterck
15k • written 11 months ago by
triplee0305
▴ 20
11
votes
5
replies
22k
views
Herald:
The Biostar Herald for Monday, November 04, 2024
herald
updated 10 months ago by
Dunois
★ 2.9k • written 10 months ago by
Biostar
3.6k
3
votes
1
reply
532
views
Creating pathogen test database from nt NCBI
Blast
NCBI
Metagenomics
updated 10 months ago by
GenoMax
153k • written 10 months ago by
r.d.jongh
▴ 20
0
votes
1
reply
526
views
Need coding help for GO enrichment analysis for non model alga with topGO
R
enrichment
topGO
GO
updated 10 months ago by
Dunois
★ 2.9k • written 10 months ago by
rhossen
• 0
1
vote
1
reply
1.6k
views
Which Tool is Better for Genome Polishing Using Illumina and Nanopore Reads: Polypolish vs. Pilon and Racon vs. Medaka?
medaka
assembly
racon
polypolish
pilon
updated 10 months ago by
Dunois
★ 2.9k • written 10 months ago by
SomeOne
▴ 240
0
votes
0
replies
367
views
Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
R
RNA-seq
GRanges
10 months ago by
octpus616
▴ 120
0
votes
2
replies
643
views
Duplication removal of RNA-seq fastq files during the process of annotation
duplication
RNA-seq
annotation
10 months ago by
Abieskawa
• 0
0
votes
2
replies
1.0k
views
PolyA tail trimming in Nanopore Direct RNA Sequencing reads
Nanopore
APA
10 months ago by
baibhu1234
▴ 60
0
votes
1
reply
528
views
fail to download data from seurat
R
seurat
updated 10 months ago by
yura.grabovska
▴ 820 • written 10 months ago by
宇
• 0
0
votes
0
replies
323
views
DiffBind ATAC-Seq Profile Plot Question About Identifying Sites
DiffBind
ProfilePlot
ATAC-Seq
10 months ago by
B.N.
▴ 10
3
votes
1
reply
836
views
GWAS from direct samples... is imputation necessary?
imputation
PLINK
GWAS
updated 10 months ago by
LChart
5.1k • written 10 months ago by
sabrilo171
▴ 20
3
votes
1
reply
595
views
WGCNA unpaired trait/expression data
WGCNA
updated 10 months ago by
LChart
5.1k • written 10 months ago by
nika13
• 0
0
votes
3
replies
1.0k
views
ChIP-seq reads trimming
trimming
chipseq
fastp
alignment
bowtie2
updated 10 months ago by
GenoMax
153k • written 10 months ago by
sk_24
▴ 10
5
votes
6
replies
1.6k
views
What is the best backgrowun gene list to choose for GSEA, ORA, and for KOBAS
RNA-SEQ
10 months ago by
Pegasus
▴ 130
1
vote
1
reply
677
views
How to normalise the RNAseq data without spike in?
Nanopore
spike-in
RNAseq
10 months ago by
Mo
▴ 50
1
vote
4
replies
1.1k
views
Emphasizing biological effect of candidate variants used in polygenic risk score
PRS
GWAS
polygenicriskscore
10 months ago by
K Lee
▴ 20
0
votes
0
replies
416
views
News:
Genomic Data Visualisation with R (online course)
R
ggplot2
Datavisualization
10 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
366
views
Easy way to annotate CDSs in GFF3 with HGNC gene symbol (and transcript name?)
GFF3
GTF
10 months ago by
gernophil
▴ 130
1
vote
3
replies
1.2k
views
Are there any preferred trajectory/pseudotime analyses that do not require an arbitrary start point?
scRNA-seq
pseudotime
monocle
scvelo
trajectory-analysis
10 months ago by
nathansuek
▴ 20
1
vote
23
replies
4.2k
views
error with Tximport when txOut = TRUE
tximport
R
updated 10 months ago by
Ram
45k • written 2.2 years ago by
mbansal
• 0
0
votes
1
reply
506
views
UMI tools to extract Paired end miRNA reads
paired
umi_extract
updated 10 months ago by
biofalconch
★ 1.3k • written 10 months ago by
otieno43
▴ 40
1
vote
1
reply
760
views
Discrepancy Between Genus and Phylum Level Results in ANCOMBC2
differential-abundance
updated 10 months ago by
andres.firrincieli
3.9k • written 10 months ago by
benkosta
• 0
0
votes
1
reply
753
views
Differential binding analysis between different TFs
Differential-binding
ChIP-seq
Transcription-factor
updated 10 months ago by
Ming Tommy Tang
★ 4.7k • written 10 months ago by
Alexandra
• 0
1
vote
0
replies
523
views
News:
St. Jude Graduate School of Biomedical Sciences Launch of MS ABDS Program
education
10 months ago by
rachel.mccollough
▴ 10
4
votes
0
replies
21k
views
Herald:
The Biostar Herald for Friday, November 01, 2024
herald
10 months ago by
Biostar
3.6k
121,912 results • Page
57 of 2439
Recent Votes
Getting VCF file for the 1000 genome project with rsid
Answer: Different UMAP for batch correction in R and Pytho
Answer: Different UMAP for batch correction in R and Pytho
Answer: Different UMAP for batch correction in R and Pytho
A: How to extract reads with no INDEL?
Answer: Different UMAP for batch correction in R and Pytho
Answer: WGCNA package in R: dendogram plot error
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Recent Replies
Comment: [vg giraffe] Unable to add read group to BAM file
by
saruman
• 0
It seems that using the following format fixes the problem: --read-group "1 SM:HG002 LB:lib1 PL:illumina PU:unit1" As shown below: …
Comment: Developing a genomics ML model using bytes?
by
dariober
15k
> what if we can use the bytes to develop a model? My understanding is that the OP is considering building a model using the sequences in …
Comment: WGCNA package in R: dendogram plot error
by
RJ
• 0
You might had delete the outliers from the expression table but then the traits data.frame doesn't match with expression table dimensions.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
No, it's a personal dataset. I haven’t seen the link, but if I understand correctly, it's not possible to use the software for free, right?
Comment: miRNA low mapping ratings
by
GenoMax
153k
So this is a public dataset? QIAseq miRNA libraries may require special handling. Have you seen --> https://resources.qiagenbioinformatics.…
Comment: Trouble when installing arb
by
GenoMax
153k
Are you referring to software found here --> http://download.arb-home.de/release/latest/ ? If so why are you installing the source. Authors…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
All valid points. This is a SRA dataset. If it is covered by a publication hopefully it is not a bad one. @Pranav if you can post the SRA a…
Answer: Different UMAP for batch correction in R and Pytho
by
antonioggsousa
3.4k
Hi, I'm mostly an R user, but the codes you presented look correct to me. The two UMAP projections *"look too similar to be different"*, …
Answer: How to properly assemble phage genomes?
by
Joe
22k
This might help: https://millardlab.org/lab-members/alumni/lucy-gannon/lucys-beginner-guide-to-bacteriophage-genome-assembly/
Comment: RNA-SEQ where only a subset of genes is of interest
by
piffelpaff
• 0
Thanks for your reply. Yes it's single-cell and we're talking about roughly 30 pre-selected genes. I see. I was rather referring to the d…
Answer: Best set of tools / workflows for predicting the biosynthesis pathways of comple
by
Joe
22k
This may not be exactly what you're looking for (kind of the other way around, predicting synthetic clusters from genes rather than the pro…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
How is this different from https://www.biostars.org/p/9615062/
Comment: Shift in RNA 3' position, Term-Seq vs RNASeq
by
npb27
▴ 20
Hi thanks for your answer Interesting idea about ribosome length, although I can't think why this should affect the apparent 3' position b…
Comment: RNA-SEQ where only a subset of genes is of interest
by
ATpoint
89k
Is this single-cell? How many genes are we talking about? > The alternative would be to just use the raw data without normalization, run W…
Comment: Developing a genomics ML model using bytes?
by
ATpoint
89k
So essentially you work on a compression algorithm, is it? If so, be sure to bechmark your idea against the hundreds of existing and fast c…
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