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Btw, for splitting, in my hands, piping `unpigz` into the unix `split` command seemed to work faster than `seqkit`.
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Splitting is a good strategy for speeding up processing. I use it all the time in my Snakemake workflows. Processing multiple files in para…
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Thank you so much for the explanation!
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4GB is in no way enough. The sort alone uses 768MB RAM per thread, so 8*768 already exceeds the memory. bwa with that many threads will use…
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This run is running on a node with 60 cores but I only requested 4GB of RAM. Seem like it is only using 2 CPUs to near 100% if I open htop.…
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