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121,896 results • Page
7 of 2438
Sort: Rank
Rank
Views
Votes
Replies
3
votes
0
replies
427
views
Tool:
CATS: reference-free and reference-based transcriptome assembly quality assessment
tool
rna-seq
transcriptomics
transcriptome
7 weeks ago by
Kristian
▴ 30
0
votes
1
reply
357
views
Systematic review and Metanalysis
and
review
Systematic
Metanalysis
updated 7 weeks ago by
Basti
★ 2.1k • written 7 weeks ago by
Sara
• 0
0
votes
0
replies
387
views
Novel Junctions from SJ.out.tab
junctions
RStudio
novel
STAR
7 weeks ago by
SpliceAndScript
• 0
0
votes
0
replies
313
views
Getting wrong scissor results while integrating bulk and single cell data
bulk
intrgration
single
scissor
cell
TNBC
7 weeks ago by
TNF_alpha
• 0
13
votes
14
replies
62k
views
11 follow
Tools to view fastq file
fastq
updated 7 weeks ago by
GenoMax
153k • written 9.4 years ago by
Roden Luo
▴ 40
3
votes
4
replies
760
views
how extract CpG methylation calls from nanopore long sequencing bam file ?
methylation
6 weeks ago by
reziyamaimaiti0331
• 0
0
votes
0
replies
585
views
News:
Online Course: Phylogenomics – 1–5 December
Phylogenomics
DivergenceTimeEstimation
PhylogeneticInference
7 weeks ago by
Physalia-courses
★ 2.6k
8
votes
5
replies
780
views
How do I generate synthetic 16S RNA gene sequences?
16S
sequence
rRNA
Infernal
augmentation
data
oversampling
cmemit
updated 5 weeks ago by
shelkmike
★ 1.8k • written 7 weeks ago by
Max Sikolenko
▴ 80
0
votes
1
reply
442
views
Minimap2 Output
with
Singletons
Interleaved
Minimap2
updated 7 weeks ago by
Istvan Albert
103k • written 7 weeks ago by
Jon
• 0
0
votes
1
reply
376
views
Liftover from mm10 to CAST/PWK – Very Low Mapping Rate & Missing Chain File
Liftover
updated 7 weeks ago by
GenoMax
153k • written 7 weeks ago by
daffodil
▴ 10
14
votes
10
replies
1.2k
views
Does edgeR supports random effects?
RNASeq
voom
randomeffects
edgeR
limma
7 weeks ago by
406339165
▴ 10
1
vote
3
replies
494
views
Intro + Question
Internship
Contribution
updated 7 weeks ago by
Pierre Lindenbaum
166k • written 7 weeks ago by
akshitabadrinath
• 0
2
votes
3
replies
512
views
New to Bioinformatics, Phage genome investigation
prostT5
genetics
phages
bacteriophage
sphae
updated 7 weeks ago by
Michael
56k • written 7 weeks ago by
Hanhan2000
▴ 10
1
vote
2
replies
432
views
Issues for Purchasing The Biostar Handbook – Professional Edition
Biostar
handbook
7 weeks ago by
Srijan
• 0
1
vote
4
replies
607
views
STAR aligned BAM files
genome_aligned
STAR
BAM
files
transcripts
updated 7 weeks ago by
Ram
45k • written 8 weeks ago by
rajdeepboral00
▴ 70
0
votes
0
replies
531
views
Statistical comparison of chr8 amplifications in matched primary vs metastatic WGS samples using log2 CN data
statistics
copy-number
cnvkit
updated 7 weeks ago by
Ram
45k • written 7 weeks ago by
Dalal
• 0
1
vote
1
reply
368
views
undefined chro name in vcf header
UnplacedContigs
Header
vcf
RandomContigs
7 weeks ago by
Mahdi&Christ
▴ 20
4
votes
2
replies
455
views
Fixing MGI Sequence Headers - FASTQ Format
fastq
mgi
7 weeks ago by
joe_genome
▴ 70
0
votes
1
reply
319
views
how extract CpG methylatiuon calls from nanopore long sequencing bam file ?
methylation
updated 7 weeks ago by
Ram
45k • written 7 weeks ago by
reziyamaimaiti0331
• 0
2
votes
4
replies
2.1k
views
Draw a genome map with CGView server?
assembly
genome map
CGView
updated 7 weeks ago by
Max Sikolenko
▴ 80 • written 6.3 years ago by
El Niño
▴ 10
0
votes
1
reply
769
views
The branch point is not labelled as expected
monocle
updated 8 weeks ago by
wschen97
• 0 • written 2.1 years ago by
Lin
• 0
11
votes
11
replies
14k
views
8 follow
Significance of the term "tile" in sequencing?
genomics
updated 7 weeks ago by
Christopher
▴ 10 • written 4.5 years ago by
joe_genome
▴ 70
2
votes
2
replies
449
views
chromosome ideogram
chromosome
updated 8 weeks ago by
cmdcolin
★ 4.3k • written 8 weeks ago by
zhangmyharper
▴ 10
1
vote
2
replies
500
views
bin reassembly question
data
metawrap
assembly
shotgun
updated 8 weeks ago by
Mensur Dlakic
★ 30k • written 8 weeks ago by
shevch2009
▴ 20
3
votes
5
replies
608
views
What is the best way to handle "?" in the 7th column (strand) of GTF files?
fasta
STAR
ENSEMBL
GTF
RefSeq
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
ki
• 0
0
votes
0
replies
536
views
News:
Workshop: Virtual RNA-seq Analysis, July 29–31
RNASeq
workshop
UConn
8 weeks ago by
zsc25001
▴ 10
1
vote
2
replies
505
views
lifting over mitochondrial SNPs between reference genomes
bcftools
liftover
hg19
picard
VCF
updated 7 weeks ago by
Jeremy Leipzig
23k • written 8 weeks ago by
112233
• 0
0
votes
3
replies
553
views
Merging segment CNV files
CNV
updated 7 weeks ago by
Ram
45k • written 8 weeks ago by
avelarbio46
▴ 30
0
votes
1
reply
4.8k
views
convert PLINK file to genepop
SNP
genome
snp
updated 8 weeks ago by
Noeliton
• 0 • written 8.5 years ago by
age00
• 0
7
votes
6
replies
820
views
6 follow
How do I interpert PCA before differential expression analysis
EDA
DESeq2
PCA
QC
updated 8 weeks ago by
Mensur Dlakic
★ 30k • written 8 weeks ago by
gogeni5529
▴ 80
3
votes
6
replies
716
views
RRBS (Reduced Representation Bisulfite Sequencing)
Trim
RRBS
Galore
updated 7 weeks ago by
dthorbur
★ 3.1k • written 8 weeks ago by
sk_24
• 0
0
votes
0
replies
562
views
News:
Course - Population Genomics Using Ancient DNA Data - Online, September 22-26
PopulationGenomics
aDNA
8 weeks ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
406
views
Repeat expansion VCF from ONT RU field and displayRU differences with gnomAD STR dataset repeat units
VCF
STRs
annotation
8 weeks ago by
ieie
▴ 20
40
votes
11
replies
6.8k
views
12 follow
What Are Your Most-Used Public Data Repositories?
database
updated 8 weeks ago by
ATpoint
89k • written 12.1 years ago by
Sean Davis
27k
5
votes
6
replies
2.5k
views
7 follow
Is there a database of bioinformatics tools & databases?
ebi
entrez
updated 8 weeks ago by
ehaag
▴ 100 • written 3.8 years ago by
LauferVA
4.8k
3
votes
9
replies
2.9k
views
how can I search for a new release data?
next-gen
microarray
RNA-Seq
homology-modelling
updated 8 weeks ago by
ehaag
▴ 100 • written 10.5 years ago by
yoingchinchina
▴ 20
0
votes
3
replies
635
views
How to trace back found motifs from homer and fimo to bed file so that visualization in genome browser
motif
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
EdisonJ
• 0
0
votes
0
replies
284
views
Problem at running Automlsa2
tree
phylogenetic
outgroup
selection
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
muhammadirfanulislambcsir
• 0
0
votes
0
replies
269
views
Comparative value conversions between fold enrichment-SHINYGO and Stringdb Score
stringdb
shinygo
8 weeks ago by
feliyon86
• 0
0
votes
1
reply
336
views
Output of heatmap2 tool on Galaxy
heatmap2
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
Stefano
• 0
1
vote
3
replies
498
views
Download data from BV-BRC
bv-brc
arm
download
bvbrc
gene
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
rica01
• 0
2
votes
3
replies
687
views
Splitting chromosomes into contigs within BAM and GTF files
samtools
gtf
chromosome
annotation
bam
updated 8 weeks ago by
rfran010
★ 1.6k • written 9 weeks ago by
MAB
▴ 10
0
votes
3
replies
515
views
concoct in metawrap binning module - use all available threads instead of requested
binning
concoct
metawrap
module
8 weeks ago by
shevch2009
▴ 20
3
votes
17
replies
1.4k
views
Inverted TSS Enrichment Plot
ATACSeq
deeptools
7 weeks ago by
nmalexan
• 0
6
votes
1
reply
821
views
hg38 vs GRCh38 chr prefix
human
genome
reference
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
DBScan
▴ 530
2
votes
4
replies
1.8k
views
Problem using FastML for ancestral sequence reconstruction
FastML
ancestral-sequence-reconstruction
fastml.std
updated 8 weeks ago by
christian.baumann
▴ 10 • written 3.2 years ago by
CM
• 0
2
votes
1
reply
370
views
Too many contigs in Spades output
spades
Assembly
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
waqaskhokhar999
▴ 160
1
vote
3
replies
499
views
How to handle contamination in 16s amplicon data
16s
amplicon
updated 8 weeks ago by
GenoMax
153k • written 8 weeks ago by
1769mkc
★ 1.3k
4
votes
12
replies
1.3k
views
Strandedness issues in STAR quantification
STAR
stranded
updated 8 weeks ago by
GenoMax
153k • written 9 weeks ago by
marek.gierlinski
▴ 30
7
votes
8
replies
999
views
RNA-seq low quality sample in downstream analysis
Mitochondrial
genes
RNA-seq
DESeq2
updated 7 weeks ago by
Aleksandra
▴ 140 • written 8 weeks ago by
Yingying
▴ 60
121,896 results • Page
7 of 2438
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allele frequency in VCF
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Comment: How to debug faulty BBmap clumpify command?
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Thank you. I am now using the latest version of BBmap and it works. There must have been a file corruption somewhere.
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You're right about contiguity with these exceptionally short ONT reads, but there is no harm in trying. It depends on the repeat content of…
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Hi, I am not sure if you still remmeber the solution you followed that time. But I am stuck with similar problem. scVI is not working good …
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If you click over to the `Reference` tab ( https://gtexportal.org/home/downloads/adult-gtex/reference ), it looks like they used GENCODE v.…
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Since they are transposons, we don’t know the exact location of them. We know their sequence of insertions from repeatmasker in dm6 genome.…
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Thanks for your kindness.
Comment: TCGA -derived Large RangeSummarizeExperient file
by
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It works well. Thank you very much ! @atpoint
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For the end user these `DFrames` are just regular data.frames, so you can do `col_data[,c("barcode", "patient", "whatever")]` or just do `a…
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I have checked with my eyes, and I didn't find it, I have only one contig that starts with k127_458 .... but the name is different - k127_4…
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So, you aren't sure about the exact species? Then you might want to be careful with reference-based assembly in general. I recommend the fo…
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That's a very comprehensive list! Thanks for sharing! `minigraph` better suits my needs because all I need is SVs for my genomes. As far a…
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amy967107
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I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
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This is a yeast strain (probably Rhodotorula spp.) and I'm trying to assemble the entire genome from nanopore reads using a reference-based…
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