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You could give `mapPacBio.sh` from BBMap suite a try while you wait for other answers. That works for reads up to 6 kb. BBMap has a new hom…
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The average is 1.8kb. I was planning to post it on GitHub, but it seems like the repository has been unattended for the last months, so I d…
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What is the average length of your reads? That error sounds like a bug, so you may want to post that on `STAR` repo as an issue.
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