just now by
Chris
▴
360
0
votes
0
replies
1
view
0
votes
2
replies
820
views
0
votes
0
replies
21
views
843
votes
170
replies
182k
views
112 follow
updated 11 weeks ago by
Biostar
3.6k
•
written 8.6 years ago by
Istvan Albert
102k
0
votes
0
replies
38
views
1
vote
1
reply
75
views
updated 5 hours ago by
Matthias Zepper
5.1k
•
written 6 hours ago by
AIMAR
▴
40
1
vote
1
reply
104
views
0
votes
0
replies
87
views
22 hours ago by
Physalia-courses
★
2.6k
1
vote
2
replies
210
views
1
vote
4
replies
216
views
updated 13 hours ago by
jaro.slamecka
▴
270
•
written 1 day ago by
Manko47
▴
10
0
votes
1
reply
151
views
updated 1 day ago by
GenoMax
152k
•
written 1 day ago by
joe_genome
▴
60
1
vote
3
replies
309
views
updated 1 day ago by
yura.grabovska
▴
800
•
written 3 days ago by
Alba
•
0
0
votes
1
reply
155
views
updated 1 day ago by
Mensur Dlakic
★
29k
•
written 1 day ago by
omereilam1
•
0
0
votes
0
replies
109
views
1
vote
1
reply
222
views
1
vote
1
reply
245
views
updated 1 day ago by
yura.grabovska
▴
800
•
written 3 days ago by
Alba
•
0
1
vote
2
replies
506
views
0
votes
2
replies
518
views
0
votes
6
replies
473
views
1 day ago by
ZuelTech
•
0
0
votes
0
replies
177
views
0
votes
2
replies
276
views
9
votes
8
replies
953
views
1
vote
3
replies
314
views
3 days ago by
boczniak767
▴
880
2
votes
4
replies
2.6k
views
updated 4 days ago by
cmdcolin
★
4.2k
•
written 4.1 years ago by
boczniak767
▴
880
0
votes
0
replies
198
views
1
vote
4
replies
1.1k
views
0
votes
1
reply
259
views
updated 4 days ago by
Pierre Lindenbaum
166k
•
written 4 days ago by
lintonf
•
0
1
vote
1
reply
252
views
updated 4 days ago by
Jouni Sirén
▴
680
•
written 4 days ago by
lushjia
•
0
2
votes
1
reply
250
views
4
votes
1
reply
301
views
2
votes
2
replies
389
views
0
votes
2
replies
268
views
0
votes
2
replies
365
views
0
votes
0
replies
209
views
5 days ago by
ecSeq Bioinformatics
▴
20
0
votes
1
reply
274
views
updated 5 days ago by
Arup Ghosh
3.3k
•
written 5 days ago by
py3296746920
•
0
3
votes
1
reply
451
views
2
votes
15
replies
954
views
3
votes
2
replies
343
views
updated 5 days ago by
jared.andrews07
★
19k
•
written 5 days ago by
louisflower1999
•
0
3
votes
3
replies
413
views
1
vote
2
replies
370
views
updated 6 days ago by
GenoMax
152k
•
written 6 days ago by
Shakunthala Natarajan
•
0
1
vote
5
replies
469
views
5 days ago by
QX
▴
70
0
votes
2
replies
404
views
0
votes
2
replies
395
views
0
votes
1
reply
377
views
updated 5 days ago by
antonioggsousa
3.4k
•
written 7 days ago by
Jamie
•
0
0
votes
0
replies
271
views
0
votes
0
replies
294
views
2
votes
6
replies
547
views
0
votes
0
replies
269
views
7 days ago by
reddyornah
•
0
3
votes
4
replies
479
views
7 days ago by
Bjorn
•
0
0
votes
0
replies
292
views
Recent Votes
Recent Locations •
All
The Netherlands, just now
France/Nantes/Institut du Thorax - INSERM UMR1087, 3 minutes ago
Italy, 5 minutes ago
Ghent & Brussels, Belgium, 5 minutes ago
Karolinska Institutet, Sweden, 12 minutes ago
University of Edinburgh, 18 minutes ago
United States, 18 minutes ago
Recent Awards •
All
Popular Question to
Chris
▴
360
Popular Question to
WS_jobs
•
0
Teacher to
lieven.sterck
15k
Popular Question to
wes
▴
90
Popular Question to
Apprentice
▴
170
Popular Question to
yura.grabovska
▴
800
Recent Replies
Answer: Hands-On Workshop - Next-Generation Sequencing Data Analysis: A Practical Introd
by
ecSeq Bioinformatics
▴
20
Last Call for this event!
Comment: Best strategy for comparing cell-type composition between disease and healthy gr
by
城玮
•
0
Thank you very much for your helpful suggestion. Including the mouse of origin in the design formula makes a lot of sense, and I appreciate…
Answer: RNA-Seq paired-end datasets
by
Matthias Zepper
5.1k
There are many. Just go to [GEO Data Sets][1] and enter something like `("rats"[MeSH Terms] OR "Rattus norvegicus"[Organism]) AND ("gse"[Fi…
Comment: Identification problem of IDE-8 cell on culture with inverted microscope
by
i.sudbery
21k
This post does not fit the theme of this forum.
Comment: Understanding NCBI vs ENA data
by
i.sudbery
21k
Both places should have checksums available - you could look if they were the same.
Comment: RNA-seq assigned alignments
by
jaro.slamecka
▴
270
To reiterate one of GenoMax's questions, is the new sequencing provider making the libraries for you? If so, have they by any chance used r…
Answer: Best strategy for comparing cell-type composition between disease and healthy gr
by
jared.andrews07
★
19k
I'd recommend reading the [differential abundance testing chapter](https://bioconductor.org/books/3.21/OSCA.multisample/differential-abunda…
Comment: How do you clean GEO metadata before downstream analysis?
by
yura.grabovska
▴
800
They did make a [Tool post originally](https://www.biostars.org/p/9613596), but still phrased it as something they just came across rather …
Comment: How do you clean GEO metadata before downstream analysis?
by
jared.andrews07
★
19k
Agreed, just make a "Tool" post if you want to spread the word about it.
People tend to take those much better than these weak attempts at…
Comment: RNA-seq assigned alignments
by
GenoMax
152k
Since you have decided to move to a new sequence provider that decision is for economic reasons and not scientific, so not much to think ab…
Comment: Obtain Common SNPS for Mouse Genome
by
GenoMax
152k
These are multi-strain VCF's so you could look for SNP's common across the strains (see --> https://www.biostars.org/p/9498113/ ) . Keep in…
Comment: RNA-seq assigned alignments
by
Manko47
▴
10
>Are you comparing the same exact library sequenced by two different companies.
Nah it's just majorty of my old datasets osciliated around…
Answer: RNA-seq assigned alignments
by
GenoMax
152k
> Previously on the single-end data from old company I was getting around 50-60% of the uniquely aligned reads
Are you comparing the same…
Comment: Extract track data from "search by region" feature on ENCODE
by
AlienPumpkinPie
•
0
Thank you for your reply! Yeah I thought the same. It feels weird to me that this is not an obvious feature.
Comment: How do you clean GEO metadata before downstream analysis?
by
yura.grabovska
▴
800
Again... "I recently *stumbled* upon a small browser-based tool"
On the site: "Created by alba0gf"
That's the second time you've linked y…
Traffic: 2207 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6