Limit : this month
all time today this week this month this year
801 results • Page 6 of 17
Sort: Rank
Rank Views Votes Replies
0
votes
0
replies
110
views
vdjtools
vdjtools
10 days ago by yueli7 ▴ 250
2
votes
0
replies
165
views
Herald: The Biostar Herald for Monday, May 06, 2024
herald
10 days ago by Biostar 2.8k
0
votes
1
reply
300
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome 16S DESeq2
updated 9 days ago by 3.6k • written 10 days ago by • 0
0
votes
0
replies
122
views
Error while loading model of Spatial data deconvolution using cell2location
Python cell2location
updated 10 days ago by 43k • written 10 days ago by ▴ 50
0
votes
0
replies
107
views
Normalizing AMR gene count data
abundance RGI
updated 10 days ago by 43k • written 10 days ago by ▴ 100
1
vote
1
reply
184
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 14 hours ago by ▴ 460 • written 11 days ago by ▴ 10
0
votes
0
replies
125
views
How to implement an IGV to streamlit app?
python streamlit igv
11 days ago by avigail.shnaider • 0
1
vote
5
replies
349
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 10 days ago by 43k • written 11 days ago by • 0
0
votes
3
replies
352
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
3 days ago by mropri ▴ 150
0
votes
1
reply
312
views
DMRcate ranges liftover hg19 to hg38
DMRcate Liftover DMR Methylation annotation
updated 11 days ago by • 0 • written 3 months ago by ▴ 20
2
votes
2
replies
250
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB protein STRING-DB-API
11 days ago by brandon • 0
0
votes
0
replies
134
views
Mitogenomes gap closure and making circular genome
gapclosure Mitogenomes validation circulargenome
11 days ago by KHURRAM SHAHZAD • 0
3
votes
6
replies
489
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 4 days ago by ▴ 20 • written 11 days ago by • 0
0
votes
0
replies
122
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria Metagenomics Database
11 days ago by Christopher • 0
4
votes
1
reply
255
views
LD-prune variants while maintaining a list of SNPs
snp vcf plink filtering independent
updated 11 days ago by 11k • written 12 days ago by ▴ 560
2
votes
2
replies
348
views
Association study using SNP data
Association Allele Parentage SNP
11 days ago by drajangirija • 0
0
votes
0
replies
120
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
11 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
125
views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
11 days ago by DGTool ▴ 20
2
votes
3
replies
335
views
Problem with Seurat package in PercentageFeatureSet function
cell single
updated 7 days ago by ★ 2.5k • written 12 days ago by ▴ 60
0
votes
1
reply
662
views
Job: Seeking Bioinformatics/Drug Design Opportunities - PhD in Pharmacology with Experience in RNA-seq, CADD & Deep Learning Molecular Generation
search job
updated 11 days ago by 142k • written 12 days ago by • 0
3
votes
4
replies
454
views
Design matrix Differential expression analysis
RNA-seq Differential-expression
updated 10 days ago by ★ 7.2k • written 13 days ago by ▴ 40
4
votes
2
replies
275
views
GRCh38.gmap file
gnomix gmap
12 days ago by lorena9132 ▴ 10
2
votes
3
replies
844
views
Issues with Mixture file when using CIBERSORTx
Deconvolution CIBERSORTx
updated 12 days ago by • 0 • written 7 months ago by • 0
0
votes
1
reply
275
views
creating batch colum for batch correction
batch-correction combat
11 days ago by Expert ▴ 10
1
vote
4
replies
387
views
Segmentation error while using a tool
smalt
updated 12 days ago by ★ 27k • written 13 days ago by • 0
0
votes
1
reply
238
views
Help with DGEList function
DGEList R
updated 11 days ago by ▴ 120 • written 12 days ago by • 0
0
votes
0
replies
167
views
Homer motif analysis
Homer
13 days ago by daffodil ▴ 10
1
vote
2
replies
1.2k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
12 days ago by Zhenyu Zhang ★ 1.2k
2
votes
1
reply
332
views
Force PLINK2 to neglect chrX as the sex chromosome
PLINK2
updated 13 days ago by 10k • written 17 days ago by ▴ 10
0
votes
5
replies
379
views
Easy way to find out which allele is minor allele from bed file?
plink
updated 13 days ago by 10k • written 13 days ago by ▴ 750
0
votes
1
reply
229
views
visualize GSEA
barplot RNA-seq GSEA enrichment
updated 12 days ago by 43k • written 13 days ago by ▴ 170
0
votes
2
replies
270
views
fastq screen aligner no specified.
BWA Bowtie2 FastqScreen
updated 6 days ago by 142k • written 13 days ago by • 0
0
votes
1
reply
213
views
filtering before dada2
bbduk qiime2 dada2 metagenomic
updated 13 days ago by 43k • written 13 days ago by • 0
0
votes
6
replies
473
views
Differential Expression Analysis using DESeq2 in R
deseq2 R
updated 13 days ago by 14k • written 13 days ago by • 0
1
vote
3
replies
324
views
TaxID mapping file
annotation blobtools RNAseq decontamination transcriptomes
11 days ago by Lada ▴ 30
1
vote
0
replies
155
views
.lgen file has 3+ different alleles
PLINK lgen ped
updated 11 days ago by 11k • written 13 days ago by ▴ 10
0
votes
0
replies
143
views
vcf procesing for ML antigen prediction
formats vcf fastaq HLA_imputation HLA_typing
13 days ago by Javier • 0
0
votes
2
replies
296
views
Extracting mutation status from MAF files - TCGA
TCGA maf mutation
updated 4 days ago by ★ 1.2k • written 13 days ago by • 0
0
votes
0
replies
136
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic Variant predisposition
13 days ago by mikemakaveli1 • 0
2
votes
2
replies
242
views
Raw counts using stringtie
stringtie RNA-seq
updated 13 days ago by 142k • written 13 days ago by • 0
0
votes
0
replies
135
views
Modify plot R mtDNA indel
plot mtDNA R
13 days ago by marco.barr ▴ 120
0
votes
0
replies
333
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot graphical_output GSEA clusterProfiler
13 days ago by NorbertK ▴ 10
4
votes
2
replies
263
views
Analysis of intronic reads included scRNA-seq data
single-cell
updated 12 days ago by 43k • written 14 days ago by ▴ 40
13
votes
14
replies
907
views
High Malat-1 expression in single cell data
single-cell
updated 9 days ago by ▴ 40 • written 17 days ago by ▴ 40
0
votes
2
replies
280
views
Downloading older version of a tool
Alignment tools
13 days ago by Ruqaiya • 0
0
votes
0
replies
157
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization illumina ngs sequencing
13 days ago by rustykb ▴ 20
1
vote
1
reply
202
views
DSEQ2 analysis
DESEQ2 logfoldchange
updated 12 days ago by 43k • written 14 days ago by • 0
3
votes
5
replies
331
views
Generating mpileup file using samtools
mpileup samtools
updated 13 days ago by 21k • written 14 days ago by • 0
0
votes
5
replies
420
views
6 follow
What purposes can TPM values be used for?
RNA-seq TPM Normalization DESeq2
updated 14 days ago by ▴ 190 • written 14 days ago by • 0
1
vote
3
replies
309
views
Does comparing two different groups to a common third group introduce bias in the analysis?
DESEQ RNAseq
updated 14 days ago by 82k • written 14 days ago by • 0
801 results • Page 6 of 17
Recent Votes
Answer: Generating consensus sequence from bam file
Answer: Short Read Data Genome Assembly
Comment: API kegg - IndexError: list index out of range
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Recent Locations • All
Belgium, 1 minute ago
United Kingdom, 3 minutes ago
Finland, 5 minutes ago
Pakistan, 6 minutes ago
Netherlands, 7 minutes ago
India, 8 minutes ago
Oviedo, 9 minutes ago
Recent Awards • All
Popular Question to ashkan ▴ 160
Supporter to Umer ▴ 50
Scholar to zx8754 11k
Teacher to Rob 6.6k
Popular Question to Nyksubuz ▴ 20
Popular Question to Govardhan Anande ▴ 150
Popular Question to Lhl ▴ 760
Recent Replies
Answer: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input? by Pierre Lindenbaum 161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 20
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 20
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 20
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Traffic: 2347 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6