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509 results • Page
5 of 11
Sort: Views
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Views
Votes
Replies
0
votes
3
replies
321
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 2 days ago by
Ram
43k • written 4 months ago by
Fadi
• 0
0
votes
3
replies
317
views
Help with mauve
mauve
updated 26 days ago by
Ram
43k • written 8 weeks ago by
reachedahead225
• 0
2
votes
4
replies
313
views
Addmetadata to seurat obj
seurat
21 days ago by
synat.keam
▴ 100
0
votes
0
replies
311
views
MACS2 CallPeak Producing Empty Files When Specifying Genome size
macs2
ChIP-Seq
peak-calling
updated 29 days ago by
Ram
43k • written 6 months ago by
Marcos
• 0
3
votes
2
replies
309
views
Seeking Guidance on How to Annotate Unusual Cell Populations in Single-Cell Data
Transcriptomics
Single-Cell
updated 26 days ago by
Ram
43k • written 8 weeks ago by
Daddy
▴ 20
0
votes
0
replies
309
views
How to subsample ATAC fragment file?
single-cell
atac-seq
scRNA-seq
updated 27 days ago by
Ram
43k • written 6 months ago by
bioinfo
▴ 150
0
votes
2
replies
308
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
15 days ago by
Koketso
• 0
0
votes
0
replies
308
views
roary not working with pgap output gff files with fasta sequence but works with prokka's gff outputs
pangenome
PGAP
NCBI
roary
Prokka
7 days ago by
pramach1
▴ 40
2
votes
4
replies
308
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
7 days ago by
samuelkalandarov2002
▴ 10
0
votes
1
reply
306
views
Sheep-Human ortholog mapping with BioMart and Orthogene/Gprofiler
ortholog
sheep
updated 23 days ago by
Shuang He
• 0 • written 3 months ago by
Michael
• 0
0
votes
1
reply
305
views
Monotonic genes in results of differential gene expression analysis
differential-expression
RNA-seq
monotonic-genes
updated 22 days ago by
Ram
43k • written 3 months ago by
Shaimaa Gamal
▴ 10
0
votes
5
replies
303
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 27 days ago by
Ram
43k • written 4 weeks ago by
bioinfo
▴ 150
0
votes
0
replies
301
views
Superfreq result interpretation for amplification events from RNA-Seq
rna-seq
Superfreq
cnv
updated 29 days ago by
Ram
43k • written 9 months ago by
aksh
• 0
1
vote
2
replies
300
views
Tumour purity and ploidy estimation
Copy-number
Whole-exome-sequencing
15 days ago by
bp22
▴ 80
0
votes
5
replies
299
views
Telescope issue
Telescope
RNA-seq
updated 15 hours ago by
GenoMax
141k • written 1 day ago by
eleven11
• 0
1
vote
2
replies
299
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 14 days ago by
Ram
43k • written 14 days ago by
aniigodwinn
• 0
0
votes
3
replies
297
views
How do I handle it if there are multiple ENSEMBL IDs in one gene symbol in the scRNA sequencing data?
Seurat
scRNA-seq
count-matrix
24 days ago by
Jeyong
• 0
3
votes
7
replies
297
views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc
cutadapt
illumina
tile
paired-end
2 days ago by
salias
• 0
0
votes
3
replies
296
views
Highest variable features in single cell data
single-cell
updated 5 days ago by
bk11
★ 2.4k • written 7 days ago by
Kazo
▴ 10
1
vote
3
replies
296
views
True variants selection
vcf
bcftools
updated 19 days ago by
dthorbur
★ 1.9k • written 20 days ago by
maevalefeuvre
• 0
0
votes
2
replies
296
views
Are GeneExpression Subtype annotations removed from TCGA-GBM?
tcga-gbm
subtyping
tcga
updated 19 days ago by
Zhenyu Zhang
★ 1.2k • written 19 days ago by
Apollonia
• 0
0
votes
1
reply
291
views
Could you please assist in identifying this cluster?
single-cell
updated 12 days ago by
Ram
43k • written 12 days ago by
Kazo
▴ 10
1
vote
2
replies
290
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
15 days ago by
bioinfo
▴ 150
0
votes
4
replies
289
views
Adaptive sampling for whole chromosomes
T2T
Nanopore
AdaptiveSampling
aneuploidy
centromeres
21 days ago by
njornet
▴ 20
0
votes
1
reply
289
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 14 days ago by
GenoMax
141k • written 14 days ago by
ycts
• 0
0
votes
2
replies
288
views
RNAseq 1 control 2 different treatment
RNA-seq
15 days ago by
matteo.levorato
• 0
2
votes
2
replies
288
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 7 days ago by
Ram
43k • written 8 days ago by
v.berriosfarias
▴ 140
2
votes
2
replies
286
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 20 days ago by
ATpoint
82k • written 20 days ago by
Shicheng Guo
★ 9.4k
1
vote
3
replies
285
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 3 days ago by
ATpoint
82k • written 4 days ago by
Francesco
▴ 10
0
votes
3
replies
284
views
BLASTP web- <20aa peptides- interpreting results/ minimum E value?
blast
peptide
blastp
alignment
updated 20 days ago by
GenoMax
141k • written 20 days ago by
neish
• 0
0
votes
2
replies
284
views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn
Normalization
RPKM
TPM
19 days ago by
ramin.k2013
• 0
1
vote
3
replies
282
views
some error in building kraken2 database
metagenome
kraken2
8 days ago by
Art1ess
• 0
0
votes
2
replies
280
views
bam merging for archaic samples
samtools
bam
updated 10 days ago by
Ram
43k • written 11 days ago by
Matteo Ungaro
▴ 100
0
votes
0
replies
280
views
Different rsID for the same chromsome, position, ref & alt allele depending on different data sources. Which one should I use?
UKB
rsID
UKB-PPP
ensembl-vep
dbsnp
21 days ago by
lsy9
▴ 20
0
votes
2
replies
279
views
Regions not clear in VCF
whole-exome
variant-calling
updated 23 days ago by
Ram
43k • written 24 days ago by
priya.bmg
▴ 60
0
votes
1
reply
278
views
cibersort. problem
cibersort
gema122
updated 23 days ago by
Ram
43k • written 27 days ago by
gem1
• 0
0
votes
2
replies
278
views
WGCNA
PCA
WGCNA
EIGENGENE
20 days ago by
rajasekargutha
▴ 60
2
votes
2
replies
278
views
How to row normalize a matrixplot?
scRNA-seq
RNA-seq
single-cell
scanpy
16 days ago by
bioinfo
▴ 150
0
votes
0
replies
277
views
Choice of relatedness cutoff for GWAS of a large cohort (>100K samples)
relatedness
IBD
GWAS
updated 9 days ago by
Ram
43k • written 14 months ago by
Oak
▴ 10
0
votes
2
replies
276
views
How to get genes in a gene set in msigdb?
msigdb
26 days ago by
Chris
▴ 260
0
votes
2
replies
277
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 15 days ago by
Ram
43k • written 16 days ago by
David
• 0
0
votes
2
replies
277
views
trying to do some GSEA in python
python
GSEA
GO
updated 28 days ago by
Wayne
★ 2.0k • written 4 weeks ago by
aleksk779
• 0
0
votes
2
replies
276
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
14 days ago by
mropri
▴ 150
0
votes
3
replies
276
views
rRNA depletion of RIP-seq samples
rRNA
RIP-seq
updated 22 days ago by
noodle
▴ 580 • written 22 days ago by
CrisRisu
• 0
3
votes
1
reply
274
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 20 days ago by
Ram
43k • written 20 days ago by
rj.rezwan
• 0
0
votes
2
replies
274
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
14 days ago by
DKA
▴ 40
0
votes
1
reply
272
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 12 days ago by
GenoMax
141k • written 12 days ago by
bioyas
▴ 10
2
votes
2
replies
270
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 28 days ago by
dsull
★ 5.9k • written 28 days ago by
ev97
▴ 20
0
votes
1
reply
268
views
How to do further funtional analysis of DEG KeggGet output list?
KEGGREST
DESEQ2
RNA-Seq
DEG
23 days ago by
joana.maclean
• 0
1
vote
3
replies
267
views
CCA with random effects model
CCA
updated 29 days ago by
dariober
14k • written 4 weeks ago by
leranwangcs
▴ 120
509 results • Page
5 of 11
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