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1,000 results • Page
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478
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News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
445
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 16 months ago by
Ram
43k • written 16 months ago by
KATA
• 0
0
votes
0
replies
748
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
16 months ago by
David Langenberger
11k
1
vote
5
replies
1.2k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
456
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
666
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.8k
views
News:
New chat server (Discord) for bioinformatics
community
16 months ago by
Samuel Lampa
★ 1.3k
0
votes
0
replies
659
views
News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
3
replies
939
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
16 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
601
views
News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
518
views
News:
Virtual RNA-seq Analysis (Model Organism) Workshop
virtual
expression
rna-seq
analysis
workshop
16 months ago by
mia.nahom
▴ 10
0
votes
0
replies
531
views
News:
Introduction to R Shiny course
WebApplications
R
RShiny
16 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
580
views
News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
17 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
558
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 15 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
378
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
505
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
424
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
3
replies
1.1k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 17 months ago by
4galaxy77
2.8k • written 17 months ago by
Pierre Lindenbaum
161k
2
votes
3
replies
721
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
17 months ago by
PeterC_NCBI
▴ 410
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 16 months ago by
synat.keam
▴ 100 • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
343
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
17 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
374
views
News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
574
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
372
views
News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
Control
Git
Github
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
475
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 17 months ago by
Ram
43k • written 17 months ago by
RASALSI
• 0
0
votes
0
replies
470
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
514
views
News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
18 months ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
1.2k
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
18 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
424
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
18 months ago by
David Langenberger
11k
0
votes
0
replies
531
views
News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
18 months ago by
dnsv.ev
• 0
0
votes
0
replies
470
views
News:
Deep Learning in Population Genomics and Phylogeography
DeepLearning
Phylogeography
PopulationGenomics
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
444
views
News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
18 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
665
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
400
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
607
views
News:
Winter School in Bioinformatics
course
workshop
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
479
views
News:
Introduction to Nextflow
Nextflow
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
728
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
380
views
News:
Bioinformatics courses in November
Bioconductor
Genomics
R
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
894
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
416
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
417
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
19 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
482
views
News:
Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics
MagicBLAST
BLAST
NCBI
Primer-BLAST
19 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
649
views
News:
course - Unix and shell scripting for bioinformatics
bash
Shell-scripting
Unix
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
441
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 19 months ago by
GenoMax
142k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
435
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
561
views
News:
Cellosaurus API
line
cell
API
20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
445
views
News:
Cellosaurus release 43 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
388
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 17 months ago by
Ram
43k • written 20 months ago by
Kate
• 0
0
votes
0
replies
368
views
News:
course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome
genomics
population
low-coverage
sequencing
updated 20 months ago by
Jeremy Leipzig
22k • written 20 months ago by
carlopecoraro2
★ 2.5k
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Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
A: How To Merge Two Fastq.Gz Files?
Answer: Annotating file using bcftools
Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
Convert fastq.gz to fastq.bgz
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Answer: How to extract cells of different species after mapping with combined genome?
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From the marker genes of each cluster, we can determine whether the cluster belongs to human or mouse. Human genes are all capitalized, whi…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
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Thanks a lot. It is almost what I need but not all. From your script, I can get information that how much degree different samples contri…
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sorry, this isn't a sequence search but search by id ...
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![enter image description here][1]Hi, this is the list/ excel I am uploading ( coverage.xlsx ) ![enter image description here][1] [1…
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There has been some spam bots in this thread which we cleaned up, you might still get notifications on it, just ignore.
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You're lucky that the senior developer @rob is often around, so you probably get your experts answer soon.
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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I think the issue is that there is some contamination of groups. If you plot a PCA or MDS you see that there is a clear separation between …
Comment: What's next after GATK variant calling pipeline?
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The link didn't work for me. After getting variants from HaplotypeCaller, there are a lot of different options for follow-up analyses, but …
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That having said, linked paper and its authors developed the csaw package over at Bioconductor that uses a window approach to avoid peak ca…
Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
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Ian
6.0k
Really interesting answer. I had missed that paper and will digest it asap. I usually use DiffBind, but recently have been looking into p…
Comment: Annotating file using bcftools
by
kl
▴ 10
It worked with this `bcftools index -t $DATADIR/cpro_imputed_hrcgrch37.R2_0.3.vcf.gz` bcftools annotate \ -a $RefGenomes/All_2018…
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
This is true. However, there are a number of studies that have done bioinformatics analysis in whole blood to see if there is a possibility…
Comment: ggrepel function: geom_text_repel()
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sooni
▴ 20
Thank you for help! I solved the probelm with the package.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
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I have checked the quality of the arrays using PCA and Boxplot (images attached) and some of the samples may deviate a little but perhaps n…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
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hophuquy0944
• 0
the nt database was extracted, and this is latest version of nt database in ncbi and blastn with version 2.15. I used many query file.fast…
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