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905 results • Page 4 of 19
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News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 11 months ago by 43k • written 6.8 years ago by ▴ 10
4
votes
1
reply
1.9k
views
News: Bioinformatics Contest 2018
contest
updated 11 months ago by 43k • written 6.3 years ago by ▴ 40
2
votes
1
reply
1.1k
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 11 months ago by 43k • written 5.6 years ago by ▴ 150
2
votes
1
reply
880
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.5k
0
votes
1
reply
2.3k
views
News: Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Strand-NGS NGS RNA-Seq UMI dna-seq
updated 11 months ago by 43k • written 6.5 years ago by ▴ 70
1
vote
1
reply
1.7k
views
News: 2nd Berlin Summer School in NGS Data Analysis 2018
DNA-Seq Workshop NGS RNA-Seq
updated 11 months ago by 43k • written 6.1 years ago by 11k
4
votes
1
reply
1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
votes
1
reply
625
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
1
reply
1.2k
views
News: Registration deadline: Comparative genomics
snp SVs
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
2
votes
1
reply
1.7k
views
News: Meet Dr. Giovanni Marco Dall'Olio
NGS training RNA-Seq
updated 11 months ago by 43k • written 5.1 years ago by 11k
2
votes
1
reply
1.4k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
0
votes
1
reply
328
views
News: Reminder: NCBI ClinVar XML update to accommodate somatic variants coming Jan 29, 2024
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
1
vote
1
reply
210
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 8 weeks ago by 43k • written 8 weeks ago by • 0
1
vote
1
reply
2.0k
views
News: Bioinformatics Contest 2017. Results
contest
updated 11 months ago by 43k • written 7.1 years ago by ▴ 70
3
votes
1
reply
1.4k
views
News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
0
votes
1
reply
1.5k
views
News: Symposium, Accelerating Biology 9-11, Jan, 2018 : Digitizing Life, Pune, India
symposium NGS
updated 11 months ago by 43k • written 6.6 years ago by 5.8k
1
vote
1
reply
1.7k
views
News: Bioinformatics for Beginners @NIH, (Bethesda, MD, USA) Feb 13 - 16, 2018
beginners training
updated 11 months ago by 43k • written 6.5 years ago by ▴ 140
0
votes
1
reply
1.5k
views
News: Live Webinar on RNA-Seq Data Analysis on 28 Feb 2018
splice-variants RNA-Seq alignment Strand-NGS
updated 11 months ago by 43k • written 6.2 years ago by ▴ 70
3
votes
1
reply
1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.4k
0
votes
0
replies
677
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
1
vote
0
replies
179
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
7 weeks ago by PeterC_NCBI ▴ 410
0
votes
0
replies
340
views
News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
5 months ago by Lars ★ 1.0k
1
vote
0
replies
641
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
875
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 11 months ago by 43k • written 4.9 years ago by ▴ 340
0
votes
0
replies
356
views
News: GWAS course
R GWAS
updated 5 months ago by 43k • written 5 months ago by ★ 2.5k
0
votes
0
replies
448
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 10 months ago by 43k • written 10 months ago by ★ 2.5k
8
votes
0
replies
1.3k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 11 months ago by 43k • written 4.8 years ago by 11k
0
votes
0
replies
1.8k
views
News: 2 Python courses in Berlin
next-gen python
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
votes
0
replies
355
views
News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
6
votes
0
replies
1.5k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 90
0
votes
0
replies
904
views
News: dbVar Structural Variation Non-redundant Reference Sets (Alpha) Release
next-gen-sequencing assembly gene genome
updated 11 months ago by 43k • written 5.9 years ago by • 0
0
votes
0
replies
962
views
News: Snakemake: Reproducible and Scalable Bioinformatic Workflows
next-gen
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
0
votes
0
replies
1.5k
views
News: Final Week for Early Bird Prices: Engaging Researchers in Good Data Management - 15th November, Cambridge
conference research life-sciences
updated 11 months ago by 43k • written 6.6 years ago by ▴ 230
0
votes
0
replies
709
views
News: IITM-EBI modelling workshop
ebi iit-madras biomodelling
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
0
votes
0
replies
754
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
2
votes
0
replies
1.0k
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 11 months ago by 43k • written 5.7 years ago by ▴ 330
2
votes
0
replies
1.3k
views
News: Scalable and Reproducible Structural Bioinformatics Workshop & Hackathon 2018
Jupyter-Notebook structural-bioinformatics
updated 11 months ago by 43k • written 6.2 years ago by ▴ 50
0
votes
0
replies
187
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
11 weeks ago by David Langenberger 11k
0
votes
0
replies
254
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
1.2k
views
News: Our CEO co-authored and is responding today on Reddit: Using large DNA databases to identify the way human populations continue to evolve.
genome evolution DNA-datasets
updated 11 months ago by 43k • written 6.6 years ago by ▴ 30
1
vote
0
replies
166
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
8 weeks ago by David Langenberger 11k
1
vote
0
replies
799
views
News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 10 months ago by 43k • written 3.7 years ago by ▴ 10
1
vote
0
replies
139
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 23 days ago by 43k • written 23 days ago by ▴ 70
0
votes
0
replies
621
views
News: Advanced Python course
Genomics Python
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
votes
0
replies
1.5k
views
News: Course: Advanced Python for Biologists. Berlin (Germany). 13-17 November 2017
Python
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
0
votes
0
replies
1.3k
views
News: Course: Variant effect prediction, 31th October - 3th November 2017
RNA-Seq
updated 11 months ago by 43k • written 6.7 years ago by • 0
1
vote
0
replies
208
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
7 weeks ago by David Langenberger 11k
0
votes
0
replies
2.2k
views
News: Course "Assembly and Annotation of genomes"
Assembly RNA-Seq mapping genome annotation
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
0
votes
0
replies
633
views
News: Call for hacking proposals: NBDC/DBCLS BioHackathon 2019
BioHackathon
updated 11 months ago by 43k • written 4.9 years ago by 161k
0
votes
0
replies
193
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
905 results • Page 4 of 19
Recent Votes
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
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Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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