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1,000 results • Page
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News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
445
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 16 months ago by
Ram
43k • written 16 months ago by
KATA
• 0
0
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0
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748
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News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
16 months ago by
David Langenberger
11k
1
vote
5
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1.2k
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News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
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0
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456
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News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
16 months ago by
carlopecoraro2
★ 2.5k
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1
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666
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News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
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2
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1.8k
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News:
New chat server (Discord) for bioinformatics
community
16 months ago by
Samuel Lampa
★ 1.3k
0
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0
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659
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News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
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3
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937
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News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
16 months ago by
PeterC_NCBI
▴ 410
0
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0
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601
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News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
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0
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518
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News:
Virtual RNA-seq Analysis (Model Organism) Workshop
virtual
expression
rna-seq
analysis
workshop
16 months ago by
mia.nahom
▴ 10
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531
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News:
Introduction to R Shiny course
WebApplications
R
RShiny
16 months ago by
carlopecoraro2
★ 2.5k
1
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580
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News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
17 months ago by
PeterC_NCBI
▴ 410
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556
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News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 15 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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378
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News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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504
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News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
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424
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News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
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3
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1.1k
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News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 17 months ago by
4galaxy77
2.8k • written 17 months ago by
Pierre Lindenbaum
161k
2
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3
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721
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News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
17 months ago by
PeterC_NCBI
▴ 410
1
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6
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1.2k
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News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 16 months ago by
synat.keam
▴ 100 • written 17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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343
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News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
17 months ago by
carlopecoraro2
★ 2.5k
1
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0
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374
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News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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574
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News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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372
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News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
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Git
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17 months ago by
carlopecoraro2
★ 2.5k
0
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474
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News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 17 months ago by
Ram
43k • written 17 months ago by
RASALSI
• 0
0
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470
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News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
17 months ago by
carlopecoraro2
★ 2.5k
0
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0
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514
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News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
18 months ago by
carlopecoraro2
★ 2.5k
3
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0
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1.2k
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News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
18 months ago by
PeterC_NCBI
▴ 410
0
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0
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424
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News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
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1.3k
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News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
18 months ago by
David Langenberger
11k
0
votes
0
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530
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News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
18 months ago by
dnsv.ev
• 0
0
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0
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470
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News:
Deep Learning in Population Genomics and Phylogeography
DeepLearning
Phylogeography
PopulationGenomics
18 months ago by
carlopecoraro2
★ 2.5k
0
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0
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444
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News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
18 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
664
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
400
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
604
views
News:
Winter School in Bioinformatics
course
workshop
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
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479
views
News:
Introduction to Nextflow
Nextflow
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
727
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
379
views
News:
Bioinformatics courses in November
Bioconductor
Genomics
R
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
894
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
416
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
19 months ago by
carlopecoraro2
★ 2.5k
0
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0
replies
417
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
19 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
482
views
News:
Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics
MagicBLAST
BLAST
NCBI
Primer-BLAST
19 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
648
views
News:
course - Unix and shell scripting for bioinformatics
bash
Shell-scripting
Unix
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
440
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 19 months ago by
GenoMax
142k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
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435
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
561
views
News:
Cellosaurus API
line
cell
API
20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
445
views
News:
Cellosaurus release 43 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
388
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 17 months ago by
Ram
43k • written 20 months ago by
Kate
• 0
0
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0
replies
368
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News:
course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome
genomics
population
low-coverage
sequencing
updated 20 months ago by
Jeremy Leipzig
22k • written 20 months ago by
carlopecoraro2
★ 2.5k
1,000 results • Page
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Recent Votes
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
Answer: Doubt about the process of annotation, detection, identification and classificat
Answer: Filtering VCF files based on VAF giving incorrect results
Problems with breakdancer (sv caller) output.
Problems with breakdancer (sv caller) output.
Comment: Add stats to boxplot in R
Answer: Genotyping sites with N in reference genome
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Recent Replies
Comment: Doubt about the process of annotation, detection, identification and classificat
by
MarcosCosta
• 0
Thank you very much, you've helped me a lot
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
• 0
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Add stats to boxplot in R
by
Ghada
• 0
Thanks. Thats work
Comment: Genotyping sites with N in reference genome
by
Zhenyu Zhang
★ 1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R
by
marco.barr
▴ 110
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome
by
shpak.max
▴ 50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
see https://www.biostars.org/p/9496674/ <!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴ 70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types? I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
by
asalimih
▴ 60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R
by
Lélé
▴ 10
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this: …
Answer: Sequencing Depth (Read Depth) Calculations
by
GenoMax
142k
You could also use `pandepth` ([**LINK**][1]) or `mosdepth` ([**LINK**][2]) as well. These will allow you to be flexible about windowed cov…
Comment: Sequencing Depth (Read Depth) Calculations
by
Pierre Lindenbaum
161k
it looks looks ok to me. <!-- This cmd works and gives me 40.5235, I was wondering whether this cmd is right or wrong, and does anyone hav…
Comment: Add stats to boxplot in R
by
Ghada
• 0
Great. thats work. Do you know how can I remove the kruskall-Wallis name from the plot? Also I would like to draw a line under the kruskall…
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