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900 results • Page 5 of 18
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News: Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling SNP gatk strand-ngs alignment
updated 11 months ago by 43k • written 7.0 years ago by ▴ 70
5
votes
3
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News: Top GitHub repos for biomedicine
open-source software GitHub
updated 11 months ago by 43k • written 5.3 years ago by ▴ 50
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0
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News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (23 - 26 October 2018)
hands-on RNA-Seq workshop
updated 11 months ago by 43k • written 5.9 years ago by 11k
0
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0
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News: Sequel System Data Release: Iso-Seq Results for Hummingbird and Zebra Finch Brain Tissue
Iso-Seq Pacific-Biosciences SMRT-Sequencing
updated 11 months ago by 43k • written 6.7 years ago by • 0
0
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0
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News: Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)
R
updated 11 months ago by 43k • written 6.0 years ago by ▴ 60
0
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0
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News: Course: Exploratory multivariate analysis and visualization of genomic data. Berlin 19-23 March 2018
Dataviz snp Multivariate-Analysis
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
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0
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News: 16S Microbial Metabarcoding
R Metabarcoding
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
0
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0
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor Statistics R
updated 11 months ago by 43k • written 6.5 years ago by ★ 2.5k
3
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0
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News: NIH Strategic Plan for Data Science
nih data-science
updated 11 months ago by 43k • written 6.1 years ago by 141k
2
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0
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News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.2k
1
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0
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News: Workshop: Introduction to Linux and workflows for biologists
Assembly snp blast alignment
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
0
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0
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News: Course: Molecular phylogenies in biodiversity. 9-13 April 2018 in Berlin (Germany)
blast R alignment
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
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0
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News: Speciation Genomics Workshop
genome snp speciation next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
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3
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News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
2
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3
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1.4k
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News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
0
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0
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News: Hackathon on how to use biodata to improve health outcomes
disease drugs genomics open-targets
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
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1
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News: Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA transcriptome-analysis RNA-Seq Strand-NGS
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
1
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0
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News: Metagenomics course. 9-13 April 2018
omics Metatranscriptomics metagenomics
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
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0
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News: Free e-learning from EMBL-EBI
free-courses EMBL EBI e-learning
updated 11 months ago by 43k • written 5.9 years ago by ★ 4.0k
0
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0
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News: R without fear: our interview to Dr Ken Aho
biostatistics R statistics
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
3
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0
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1.4k
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News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 11 months ago by 43k • written 4.8 years ago by ★ 2.5k
2
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2
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News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 11 months ago by 43k • written 5.9 years ago by ★ 5.2k
0
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0
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News: Workshop: RAD-seq data analysis (Berlin, 2-6 July 2018 )
RAD-seq SNP Stacks2.0
updated 11 months ago by 43k • written 6.0 years ago by ★ 2.5k
2
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1
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1.4k
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News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 11 months ago by 43k • written 6.9 years ago by ▴ 610
1
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2
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News: Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling rare-disease dna-seq strand-ngs
updated 11 months ago by 43k • written 6.1 years ago by ▴ 70
0
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0
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News: Physalia-courses: Upcoming courses
SNP next-gen R RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ★ 2.5k
0
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0
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News: Training in Bioinformatics for Beginners @ NIH, USA, Jan 15-18,2019
Beginners Training
updated 11 months ago by 43k • written 5.5 years ago by ▴ 140
4
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0
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News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
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0
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News: Joint webinar by Agilent Technologies and Strand Life Sciences on 'Analysis of Variants using GeneSpring GX'
agilent variant-analysis strand genespring
updated 11 months ago by 43k • written 6.5 years ago by ▴ 70
0
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0
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News: New bioinformatics courses at Edinburgh Genomics
Training R Linux RNA-Seq Workshop
updated 11 months ago by 43k • written 5.2 years ago by ▴ 40
0
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0
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News: BioSB Course Pattern Recognition (5th edition), 25-29 September 2017, Amsterdam, the Netherlands
machine-learning
updated 11 months ago by 43k • written 6.8 years ago by ▴ 10
0
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0
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1.4k
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News: Introduction to Python for biologists (IPYB06)
genome RNA-Seq next-gen
updated 11 months ago by 43k • written 5.0 years ago by ▴ 60
2
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2
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1.4k
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News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 11 months ago by 43k • written 6.4 years ago by ★ 2.5k
0
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0
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News: Metabarcoding Workshop. 4-8 March
metabarcoding next-gen
updated 11 months ago by 43k • written 5.3 years ago by ★ 2.5k
1
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0
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1.4k
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News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 10 months ago by 43k • written 4.3 years ago by 20k
0
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0
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1.4k
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News: Hands-on machine learning workshop for biomedical data
genome machine-learning
updated 11 months ago by 43k • written 5.8 years ago by ▴ 10
0
votes
0
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1.4k
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News: Summer Bioinformatics Training Program - Louisiana Biomedical Research Network
genome RNA-Seq gene next-gen-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ▴ 340
0
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1
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1.4k
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News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
3
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1
reply
1.4k
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News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 11 months ago by 43k • written 7.1 years ago by 23k
0
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0
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1.4k
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News: eDNA Metabarcoding Workshop in Canada
R eDNA next-gen
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.5k
0
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0
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1.4k
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News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 11 months ago by 43k • written 4.8 years ago by ▴ 450
0
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0
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1.4k
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News: Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals---Bulk and Single Cell Data
scRNA-Seq webinar RNA-Seq single-cell
updated 11 months ago by 43k • written 5.5 years ago by ▴ 30
3
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1
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1.4k
views
News: GATK returns to a fully open-source license
gatk
updated 11 months ago by 43k • written 6.9 years ago by 100k
1
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0
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1.3k
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News: SNAKEMAKE course in Berlin
next-gen
updated 11 months ago by 43k • written 5.7 years ago by ★ 2.5k
0
votes
0
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1.3k
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News: National Symposium on Database Development and Biocuration (April 6-7, 2018; www.genomeindia.org/nsddb)
database Biocuration curation
updated 11 months ago by 43k • written 6.2 years ago by • 0
0
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0
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1.3k
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News: See your data in context with NCBI s updated Genome Data Viewer
bam ncbi
updated 11 months ago by 43k • written 6.1 years ago by 161k
0
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0
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1.3k
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News: Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
R ChIP-Seq next-gen-sequencing
updated 11 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
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0
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1.3k
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News: Brand new bioinformatics courses at Edinburgh Genomics
metagenomics python RNA-Seq training
updated 11 months ago by 43k • written 4.9 years ago by ▴ 40
0
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0
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1.3k
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News: Training in Creating Plots, Graphs and Maps using R @ NIH, USA, Mar 6 - 9, 2018
R plots maps graphs
updated 11 months ago by 43k • written 6.2 years ago by ▴ 140
0
votes
0
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1.3k
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News: Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics Analysis Training
updated 11 months ago by 43k • written 5.3 years ago by ▴ 140
900 results • Page 5 of 18
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A: Deeptools plotHeatmap - Maintain Order of Input BED file
Comment: NGS forensics: how to know if data is fabricated
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
Answer: DNA methylation preprocessing
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
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Recent Replies
Comment: gvcf joint calling by zihanss • 0
Thanks for your comment, I get it now.
Answer: ChIP-seq datasets: input samples omitted? by ATpoint 82k
In my hands (and from what I know based on many years here) inputs are almost exclusively used during peak calling to correct for loci-spec…
Comment: How to assign cell types after integration in scRNA by ATpoint 82k
No difference here. After all you typically want a label per cluster/group, so either subset to the control condition to do the assignment,…
Comment: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
I found the question and ASK the GPT4 turbo
Answer: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
Your approach seems reasonable and well-informed, though it's perhaps less customary in the field, which could be why you haven't found pap…
Answer: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
It takes 29 seconds to assemble this genome (20 CPUs) with the following statistics: 135 contigs, total 2821177 bp, min 200 bp, max …
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 520
IMO (and unfortunately) there needs to be an effort to develop these algorithms.
Comment: gvcf joint calling by Jeremy Leipzig 22k
the samples that are `./.` have no coverage (or not enough to call a genotype) and the `0/0` are homozygous reference
Answer: How many reads for WGS Sequencing? by GenoMax 141k
Did you download the complete dataset available from ENA/NCBI SRA? This is an older dataset (from 2012) with a total of 1146212 reads and 1…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller? by zihanss • 0
Hello, I want to know that why my gVCF files have "./." besides "0/0", "1/1"? Thanks
Comment: gvcf joint calling by zihanss • 0
![enter image description here][1] [1]: /media/images/15eedc1a-b2c6-4966-be39-b5173dab And I confused with the file that has "./." and…
Comment: gvcf joint calling by zihanss • 0
![enter image description here][1] [1]: /media/images/16fd502c-4e01-4f56-8562-0e0d4aac Okay, this is the merged gVCF file.
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC: by Mensur Dlakic ★ 27k
Enzymes under the umbrella of `1.1.1.-` work `with NAD(+) or NADP(+) as acceptor`. That only tells you about their cofactors, but not about…
Comment: NGS forensics: how to know if data is fabricated by dsull ★ 5.9k
I don't think people have undertaken the effort to create an anomaly detector for RNAseq -- people's efforts are dedicated towards developi…
Comment: NGS forensics: how to know if data is fabricated by dsull ★ 5.9k
I'd say post on pubpeer -- it's the best forum for this sort of discussion. As for what additional analysis I recommend: I'd say look at s…
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