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News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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814
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News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 10 months ago by 43k • written 4.0 years ago by 5.3k
0
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0
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532
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News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 10 months ago by 43k • written 4.0 years ago by ▴ 10
6
votes
4
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1.3k
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News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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814
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News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
0
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0
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846
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News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
2
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0
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657
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News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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748
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News: Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course progranming Python
updated 10 months ago by 43k • written 4.0 years ago by ▴ 70
0
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0
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654
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News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
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0
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639
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News: Tailored online courses in R
Machine-Learning R tidyverse
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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640
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News: Reminder for the precisionFDA Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
6
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13
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2.1k
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News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.4k
2
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0
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520
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News: ONLINE COURSE-Advanced programming in R
R
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
2
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0
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818
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News: Landscape Genomics course ONLINE
snp R next-gen
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
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2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 10 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
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0
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1.3k
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News: Population Genomics course online
R SNP next-gen
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
4
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0
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1.4k
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News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
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1
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2.6k
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News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 10 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
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0
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551
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News: Results are now Available for the precisionFDA, George Washington University, and FDA/CBER HIVE BioCompute Object App-a-thon
R
updated 10 months ago by 43k • written 4.1 years ago by ▴ 150
0
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0
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811
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News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
6
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0
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974
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.9k
0
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0
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591
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News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 10 months ago by 43k • written 4.1 years ago by ▴ 150
0
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0
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754
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News: Cellosaurus release 34 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 4.1 years ago by ▴ 120
1
vote
0
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622
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News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 10 months ago by 43k • written 4.1 years ago by ▴ 10
0
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0
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662
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News: Reminder for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
1
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0
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926
views
News: Submit to ACM COMPASS 2020 -- Now with a Global Health Track - Deadline extended to March 8th!!
global-health public-health
updated 10 months ago by 43k • written 4.2 years ago by 18k
0
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0
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676
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News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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900
views
News: New Courses @ Edinburgh Genomics
alignment GATK R RNA-Seq Python
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
2
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0
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543
views
News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
0
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4
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1.0k
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 10 months ago by 43k • written 4.2 years ago by 9.7k
1
vote
1
reply
938
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 10 months ago by 43k • written 4.2 years ago by ▴ 40
0
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0
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618
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News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
1
vote
0
replies
857
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 10 months ago by 43k • written 4.2 years ago by ▴ 50
0
votes
0
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608
views
News: PrecisionFDA FDA Open Data Challenge Reminder
R
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
9
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3
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4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by 43k • written 4.6 years ago by ▴ 920
0
votes
0
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731
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News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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595
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News: Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder
R
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
0
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0
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586
views
News: Training in Variant Analysis @NIH, March 23-26,2020
Variant-calling Variant-Analysis Genotype next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
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546
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News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 10 months ago by 43k • written 4.2 years ago by ▴ 150
0
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0
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772
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News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
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699
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News: Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
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699
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.2 years ago by ▴ 140
2
votes
0
replies
699
views
News: Population Genomics course
R SNP next-gen
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.5k
7
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0
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1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 10 months ago by 43k • written 4.3 years ago by 141k
1
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0
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706
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 10 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
549
views
News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 10 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
647
views
News: 2nd Workshop on Single-Cell Sequencing
single-cell sequencing
updated 10 months ago by 43k • written 4.3 years ago by • 0
1
vote
0
replies
640
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 10 months ago by 43k • written 4.3 years ago by ▴ 150
2
votes
0
replies
805
views
News: RNAseq data analysis with R and Bioconductor
R RNA-Seq RNA Bioconductor
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
2
votes
0
replies
1.3k
views
News: Introduction to genome-wide association studies (GWAS)
Unix GWAS R
updated 10 months ago by 43k • written 4.3 years ago by ★ 2.5k
903 results • Page 6 of 19
Recent Votes
Discrepancy in read counts from fastq
R: Unable to use analyzeFeatures because argument is not a vector
Comment: Odd alignment question/finding
Comment: POSSUM not working due to incompatible pssm file
Comment: Can't install AnnotationHub
C: TOPGO- how to do GO enrichment using a custom go database?
Answer: NGS forensics: how to know if data is fabricated
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Popular Question to Jeol ▴ 20
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Recent Replies
Comment: Bacterial plasmid analysis by shenwei356 8.4k
My colleague has an unpublished tool for plasmid analysis (clustering), and it has really good results. You might have a try. https://githu…
Comment: Odd alignment question/finding by ATpoint 82k
bwa mem is not fully deterministic, see from the developer: https://www.biostars.org/p/238628/#238817
Comment: How to perform single cell multimodal integration using Seurat for Geo datasets by ATpoint 82k
It's funny that you ask because the paper that these data were used for is called `Integrated analysis of multimodal single-cell data` from…
Comment: Odd alignment question/finding by liorglic ★ 1.4k
I can't come up with an explanation, but two things you can try for debugging are: 1) look at the fastp stats - do they add up and make sen…
Answer: Bacterial plasmid analysis by Mensur Dlakic ★ 27k
If you put all your sequences in separate files but in the same directory, this program will build a cladogram based on average nucleotide …
Comment: POSSUM not working due to incompatible pssm file by rianna.collins • 0
Thank you so much. I'm new to this and didn't realise there was a code option.
Answer: Is there a way to increase the automatic label text size in Cytoscape? by Scooter ▴ 280
Greetings, Are you saying that you can't use the size setting in the style tab? That should certainly work, as should the label size se…
Answer: Basic stats in hierfstat by mdav • 0
Hi Zoe, did you find an answer for this? I am also getting the same error.
Comment: GATK won't produce figures while analyzing covariates to generate 'recal_plots.p by GenoMax 141k
Your cluster may be missing libraries etc to create the PDF plots (this looks like a cluster job submission) on your cluster. Did you check…
Comment: Post-imputation plot by kl ▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis by nicole.kavanagh • 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis by GenoMax 141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
Comment: DESeq2 processing problems by ATpoint 82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
Answer: Post-imputation plot by LChart 3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
Comment: RNA editing sites based on DNA seq and RNA seq by Adam ▴ 30
Are those 20% unaligned reads coming after hyper-editing detection?
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