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743 results • Page 7 of 15
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News: precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling Challenge Submission Reminder
genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
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0
replies
685
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News: Training in Molecular Modeling and Molecular Dynamics @NIH,February 18-21,2020
Structural-biology Modeling next-gen
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
2
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0
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621
views
News: 2-day Nextflow training course in Berlin
workflow nextflow
updated 11 months ago by 43k • written 4.3 years ago by ★ 2.5k
1
vote
0
replies
861
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News: Training in Metagenomics Data Analysis @ NIH,February 10-13,2020
Metagenomics Biomedical next-gen Data-analysis
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
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0
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829
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News: Training in Statistical Analysis using R @NIH, February 5-7,2020
statistical-analysis R training
updated 11 months ago by 43k • written 4.4 years ago by ▴ 140
1
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0
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1.4k
views
News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 11 months ago by 43k • written 4.4 years ago by 20k
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0
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1.0k
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News: Course - Proteomics Using R/Bioconductor in Berlin
R Proteomics Bioconductor
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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950
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News: NGS Data Analysis Training for Researchers - March 25-27 in Munich
NGS data-analysis training workshop
updated 11 months ago by 43k • written 4.4 years ago by 11k
4
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0
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725
views
News: Call for Bioinformatics Papers - Genes Special Issue
gene
updated 11 months ago by 43k • written 4.4 years ago by ▴ 740
0
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0
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868
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News: Nextflow training course in Berlin
Pipeline Nextflow
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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592
views
News: Speciation Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
votes
0
replies
761
views
News: Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP R metabarcoding Obitools
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
2
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0
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983
views
News: Long-read nanopore Sequencing course
software-error Long-reads assembly nanopore Pacbio
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
1
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0
replies
710
views
News: Cellosaurus release 33 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 4.4 years ago by ▴ 120
0
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0
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709
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
Genomics rna-seq next-gen
updated 11 months ago by 43k • written 4.4 years ago by ▴ 140
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0
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1.0k
views
News: Physalia courses in February 2020 (Berlin)
assembly R SNP sequencing
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
1
vote
0
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864
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News: UniProt: Changes to Proteomes
uniprot proteome
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
0
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0
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893
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News: UniProt: Functional annotation of different gene products in UniProtKB/Swiss-Prot
uniprot protein xml
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
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0
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803
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News: UniProt: Change of annotation topic 'Interaction'
uniprot xml
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
3
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1
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1.2k
views
News: UniProt: Change of FT and CC section in UniProtKB text format
uniprot protein
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
4
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1
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1.2k
views
News: Bioinformatics Workflows with Nextflow
Netflow reproducibility Workflows
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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1.1k
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News: Discovering the world of the Long-read nanopore Sequencing
assembly Pacbio nanopore sequencing
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
votes
0
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814
views
News: UniProt: Change of line length in UniProtKB text format
uniprot
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
0
votes
1
reply
1.1k
views
News: Google Summer of Code 2020 announced for mentor organisations
internship GSoC
updated 11 months ago by 43k • written 4.4 years ago by 23k
2
votes
0
replies
774
views
News: Interested in learning more about Bayesian Statistics?
Bayesian-Statistics R Stan
updated 11 months ago by 43k • written 4.4 years ago by ★ 2.5k
0
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0
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746
views
News: Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design RNA-Seq genomics
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
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0
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733
views
News: BioC2020: mark your calendars!
conference Bioc2020
updated 11 months ago by 43k • written 4.5 years ago by 7.1k
0
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0
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794
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
Graphs R Maps Plots
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
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1
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1.6k
views
News: :: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS RNA-Seq Training
updated 11 months ago by 43k • written 4.5 years ago by 11k
0
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0
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718
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News: 3rd edition of single cell RNAseq course in Berlin
next-gen-sequencing R RNA-Seq
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
2
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0
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735
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
3
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0
replies
815
views
News: Phylogenomics course in Berlin
snp R next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
0
votes
0
replies
589
views
News: 2nd National Symposium on Database Development and Biocuration
Biocuration
updated 11 months ago by 43k • written 4.5 years ago by • 0
0
votes
0
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771
views
News: Webinar: Single Cell Multi-omics Data Analysis in Partek Flow - Visualization of CRISPR Data
CRISPR single-cell
updated 11 months ago by 43k • written 4.5 years ago by ▴ 30
0
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2
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706
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News: Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 11 months ago by 43k • written 4.5 years ago by 23k
0
votes
0
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1.0k
views
News: scRNA-seq data analysis course in Berlin
scRNAseq R RNA-Seq RNA
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
0
votes
0
replies
692
views
News: 5th edition of the POPULATION GENOMICS course in Berlin
R genome next-gen
updated 11 months ago by 43k • written 4.5 years ago by ★ 2.5k
1
vote
0
replies
702
views
News: The precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling and Biomarker Discovery Challenge is now live!
brain-tumor machine-learning biomarkers
updated 11 months ago by 43k • written 4.5 years ago by ▴ 150
0
votes
0
replies
804
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
sequence RNA-Seq training
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
0
votes
0
replies
826
views
News: Training in Bioinformatics for Beginners @NIH
sequence-analysis omics training
updated 11 months ago by 43k • written 4.5 years ago by ▴ 140
3
votes
0
replies
798
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News: ::FINAL CALL:: NGS Data Analysis for Beginners - 11-13 December 2019 in Munich, Germany (2 seats left)
NGS Workshop
updated 11 months ago by 43k • written 4.5 years ago by 11k
1
vote
0
replies
869
views
News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 11 months ago by 43k • written 4.5 years ago by ▴ 10
0
votes
0
replies
683
views
News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
830
views
News: EMBL Course: Analysis and Integration of Transcriptome and Proteome Data
Data-analysis Proteomics Transcriptomics
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
891
views
News: EMBO Practical Course: Measuring Translational Dynamics by Ribosome Profiling
Ribosome-profiling Gene-expression
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
News: EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis Proteomics
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.0k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
votes
0
replies
774
views
News: EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy Clinical-application Tumour-cells
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
790
views
News: EMBL Course: Exploratory Analysis of Biological Data: Data Carpentry
Data-Analysis Exploratory-Analysis Biological-Data
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
0
votes
0
replies
699
views
News: EMBO | EMBL Symposium: Biological Oscillators: Design, Mechanism, Function
Oscillation Modelling Imaging
updated 11 months ago by 43k • written 4.6 years ago by ▴ 10
743 results • Page 7 of 15
Recent Votes
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Answer: TFs and Gene databases
A: Is there a software that can compare phylogenetic trees to each othe (face to fa
Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
Differentially Expressed Genes between two conditions (scRNA, single GEO dataset with multiple samples and no cell annotations)
Differentially expressed genes between Seurat objects
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Recent Awards • All
Popular Question to finswimmer 16k
Popular Question to Ezequiel • 0
Popular Question to alanh ▴ 170
Scholar to Peter 6.0k
Popular Question to ashkan ▴ 160
Supporter to Umer ▴ 50
Scholar to zx8754 11k
Recent Replies
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: zero TPM for many gene including housekeeping when using kallisto by ashkan ▴ 160
@atpoint I checked all transcripts of GAPDH. they all have 0 TPM.
Comment: how to treat the replicates while performing WGCNA by andres.firrincieli 3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated by alanh ▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data? by Zhenyu Zhang ★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by Ram 43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs by BATMAN • 0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thank you. What exactly do you mean? Changing `ha = rowAnnotation(text = anno_mark(at = mark_at, labels = gene_names_interesting_in_cluster…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by Ram 43k
Try tweaking the `gp` of the rowAnnotation instead of tweaking the `annotation_name_gp` - that might do the trick.
Comment: Help! Reconstruction of locus, order contigs by dthorbur ★ 2.0k
I don't understand your comment. What do you mean? > my idea is not to have to write it down If you have an alignment already, why can't…
Comment: Details on salmon index by Rob 6.6k
Hi Lorenzo, That is correct. The initial version of salmon used the RapMap index explained above. When we published the selective align…
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