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509 results • Page
3 of 11
Sort: replies
Rank
Views
Votes
Replies
0
votes
3
replies
335
views
10x GEX and ADT data analysis in Seurat
Seurat
scRNA-seq
ADT
Cite-seq
GEX
updated 18 days ago by
ATpoint
82k • written 20 days ago by
gdfsnkfns
• 0
1
vote
3
replies
6.1k
views
Error for converting from gene symbol to Entrez IDs
Entrez-ID
org.Dr.eg.db
updated 15 days ago by
Ram
43k • written 5.5 years ago by
modarzi
▴ 170
2
votes
3
replies
3.0k
views
RNA-seq batch effect correction
RNA-Seq
batch-effect
sequencing
updated 13 days ago by
Ram
43k • written 7.0 years ago by
endikavarela
• 0
0
votes
3
replies
241
views
KEGG Pathways
r
RNA-seq
updated 1 day ago by
Ram
43k • written 1 day ago by
Sudip
• 0
0
votes
3
replies
3.1k
views
Rna-seq for differential expression analysis
differential-expression
transcriptome
updated 13 days ago by
Ram
43k • written 9.0 years ago by
siddharth.patel.153
• 0
2
votes
3
replies
1.1k
views
Polishing PACBIO corrected assembly using ONT and ILLUMINA data (.fastq)
fasta
Nanopore
long-read
fastq
updated 26 days ago by
Ram
43k • written 2.9 years ago by
K
▴ 10
0
votes
3
replies
630
views
Not all variants are annotated with AF - expected or a problem?
Variant-Calling
WGS
Alignment
updated 29 days ago by
Ram
43k • written 7 months ago by
Luiz
▴ 30
0
votes
3
replies
316
views
Help with mauve
mauve
updated 26 days ago by
Ram
43k • written 8 weeks ago by
reachedahead225
• 0
0
votes
3
replies
1.1k
views
Batch effect for SNP array
sva
combat
batch-effect
SNP
updated 16 days ago by
Ram
43k • written 4.2 years ago by
Taylor95
▴ 10
1
vote
3
replies
365
views
PCA plot
DESeq2
PCAplot
updated 3 days ago by
LauferVA
4.2k • written 7 days ago by
Aaliya
▴ 10
0
votes
3
replies
297
views
How do I handle it if there are multiple ENSEMBL IDs in one gene symbol in the scRNA sequencing data?
Seurat
scRNA-seq
count-matrix
24 days ago by
Jeyong
• 0
1
vote
3
replies
2.5k
views
Problem to remove subset of patients with plink
plink
PED
updated 9 days ago by
chrchang523
10k • written 6.1 years ago by
Ginevra
▴ 10
1
vote
3
replies
228
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 1 day ago by
GenoMax
141k • written 1 day ago by
jeffrey.maurer.informatics
• 0
1
vote
3
replies
1.8k
views
Using Nanoplot to asses quality of ONT data
ONT
Long-read-sequencing
NanoPlot
updated 26 days ago by
Ram
43k • written 2.3 years ago by
matt81rd
▴ 10
0
votes
3
replies
320
views
CWl and toil singularity image e.g busybox? Thank you
toil
singularity
updated 2 days ago by
Ram
43k • written 4 months ago by
Fadi
• 0
0
votes
3
replies
195
views
Software to separate reads from different individuals
software
development
nanopore
updated 2 days ago by
GenoMax
141k • written 2 days ago by
njornet
▴ 20
1
vote
3
replies
4.1k
views
Evaluating removing batch effect tools with PCA or MDS?
bioconductor
limma
sva
r
batch-effect
updated 13 days ago by
Ram
43k • written 7.6 years ago by
Lluís R.
★ 1.2k
0
votes
3
replies
265
views
can't download and use mageck-vispr for R?
mageck-vispr
Rstudio
updated 29 days ago by
ATpoint
82k • written 4 weeks ago by
Vishal
• 0
0
votes
3
replies
1.8k
views
How to remove batch effect in copy number segment mean
Combat
CNA
Batch-Effect
updated 14 days ago by
Ram
43k • written 5.5 years ago by
sugus
▴ 150
0
votes
3
replies
295
views
Highest variable features in single cell data
single-cell
updated 5 days ago by
bk11
★ 2.4k • written 6 days ago by
Kazo
▴ 10
1
vote
3
replies
372
views
Ensembl gene id conversion
biomart
ensembl
updated 15 days ago by
ATpoint
82k • written 17 days ago by
naveedhasan2000
• 0
2
votes
3
replies
263
views
P-value Threshold Consideration in Multi-Sample RNA-Seq Experiment
statistics
RNA-Seq
p-value
updated 29 days ago by
Ram
43k • written 29 days ago by
Netanel
• 0
1
vote
3
replies
405
views
multiple sequence alignment
BLAST
multiple-sequence-alignment
clustal-omega
MSA
updated 23 days ago by
Ram
43k • written 26 days ago by
catherinemaria2728
• 0
1
vote
3
replies
250
views
Filter BAM to keep only alignments at an interval, ignoring reads spliced over
samtools
bam
splicing
8 days ago by
WouterDeCoster
47k
1
vote
3
replies
283
views
How to assign cell types after integration in scRNA
scRNA-seq
updated 3 days ago by
ATpoint
82k • written 4 days ago by
Francesco
▴ 10
0
votes
2
replies
580
views
Bacterial contamination in human DNA sample
Long-read-sequencing
Bacterial-contamination
updated 26 days ago by
Ram
43k • written 22 months ago by
priya.bmg
▴ 60
2
votes
2
replies
634
views
Batch correction for DE analysis
batch-correction
mRNA
RNA-seq
DEGs
MDSplot
updated 15 days ago by
Ram
43k • written 2.6 years ago by
Yoonji
▴ 10
2
votes
2
replies
1.6k
views
read count for RNA sequencing via nanopore
long-reads
RNA-seq
gene-expression
read-count
updated 26 days ago by
Ram
43k • written 2.9 years ago by
gat
• 0
1
vote
2
replies
298
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 14 days ago by
Ram
43k • written 14 days ago by
aniigodwinn
• 0
1
vote
2
replies
814
views
What type of normalization does removeBatchEffect function require as the input?
batch
limma
removeBatchEffect
rna-seq
batch-effect
updated 15 days ago by
Ram
43k • written 21 months ago by
ev97
▴ 20
2
votes
2
replies
287
views
How to calculate identity percentage between proteins contained in a FASTA file?
protein
FASTA
alignment
updated 7 days ago by
Ram
43k • written 8 days ago by
v.berriosfarias
▴ 140
4
votes
2
replies
244
views
Trying to write bwa mem -> samtools view -> samtools sort loop
bwa
samtools
mapping
genome
updated 27 days ago by
Pierre Lindenbaum
161k • written 27 days ago by
Lee
• 0
0
votes
2
replies
628
views
Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal Precursors in In Silico Study
mirdeep2
maturebayes
microrna
updated 29 days ago by
Ram
43k • written 12 months ago by
Beatriz
• 0
0
votes
2
replies
233
views
How to detect and visualize ORFs in bacterial genome?
statistics
visualization
ORFs
genome
19 days ago by
marongiu.luigi
▴ 710
2
votes
2
replies
270
views
Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc
trimming
adapters
cutadapt
RNAseq
updated 28 days ago by
dsull
★ 5.9k • written 28 days ago by
ev97
▴ 20
0
votes
2
replies
258
views
Cell communacations analysis. I only have the proteome of one type of cell
How
to
updated 28 days ago by
QX
• 0 • written 5 weeks ago by
David Arturo
• 0
0
votes
2
replies
280
views
bam merging for archaic samples
samtools
bam
updated 10 days ago by
Ram
43k • written 11 days ago by
Matteo Ungaro
▴ 100
2
votes
2
replies
286
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 20 days ago by
ATpoint
82k • written 20 days ago by
Shicheng Guo
★ 9.4k
0
votes
2
replies
273
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
14 days ago by
DKA
▴ 40
0
votes
2
replies
288
views
RNAseq 1 control 2 different treatment
RNA-seq
15 days ago by
matteo.levorato
• 0
1
vote
2
replies
1.0k
views
An issue with application of SPAdes genome assembly in Galaxy
Galaxy
SPAdes
updated 29 days ago by
Ram
43k • written 2.5 years ago by
adnan.lahuf
• 0
0
votes
2
replies
2.8k
views
RNA-seq unbalanced batch effect correction
limma
RNA-Seq
edgeR
batch-effect
updated 13 days ago by
Ram
43k • written 7.0 years ago by
endikavarela
• 0
1
vote
2
replies
935
views
vg surject for long reads
long-reads
vg
variation-graph
surject
updated 26 days ago by
Ram
43k • written 24 months ago by
ved_vyas
▴ 20
3
votes
2
replies
1.2k
views
DESeq2 design and Batch effects
RNA-Seq
batch-effect
DESeq2
updated 14 days ago by
Ram
43k • written 4.4 years ago by
baldissera152
▴ 10
0
votes
2
replies
341
views
GSEA analysis in R
GSEA
R
Arabidopsis
13 days ago by
Sudip
• 0
1
vote
2
replies
827
views
Replacing default numbers with geneNames in enhancedVolcano
EnhancedVolcano
updated 29 days ago by
Ram
43k • written 2.7 years ago by
Mohan
• 0
0
votes
2
replies
170
views
How to update R on ubuntu
installation
update
R
apt-get
2 days ago by
Bosberg
▴ 50
1
vote
2
replies
240
views
alignment result
RNA-seq
samtools
hisat2
6 days ago by
ahmad.sajad4541
• 0
0
votes
2
replies
284
views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn
Normalization
RPKM
TPM
19 days ago by
ramin.k2013
• 0
0
votes
2
replies
434
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
12 days ago by
Ashok
• 0
509 results • Page
3 of 11
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