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119 results • Page
1 of 3
Sort: Views
Rank
Views
Votes
Replies
0
votes
16
replies
3.1k
views
Gff to genbank - feature is missing
DNA
augustus
gff3
genbank
updated 5 days ago by
Ram
39k • written 5.0 years ago by
rororo
• 0
1
vote
14
replies
2.8k
views
How to convert Haplotypes file to PLINK format data
R
plink
updated 5 days ago by
Ram
39k • written 5.0 years ago by
bha
▴ 80
1
vote
10
replies
2.5k
views
How to specify/calculate subject coverage of the alignment (alignment of query[protein sequence] and subject[Nucleotide sequence]) in tBLASTn?
alignment
BLAST
tBLASTn
updated 2 days ago by
Ram
39k • written 4.2 years ago by
Kumar
▴ 100
1
vote
4
replies
2.5k
views
DBD::mysql::st execute failed: The table 'InplgOrthoInplg
orthomcl
ortho
ubuntu
mysql
updated 4 days ago by
Ram
39k • written 5.0 years ago by
wocana
▴ 20
0
votes
2
replies
2.5k
views
How to get Haplotype file from PLINK format data
SNP
PLINK
updated 6 days ago by
Ram
39k • written 5.1 years ago by
bha
▴ 80
0
votes
4
replies
2.1k
views
picard markduplicate output smaller file
picard
markduplicates
gatk
updated 2 days ago by
Ram
39k • written 4.3 years ago by
Peter Chung
▴ 190
0
votes
5
replies
2.0k
views
error during installationi of KisSplice
cpp
c
RNA-Seq
kissplice
SNP
updated 6 days ago by
Ram
39k • written 6.8 years ago by
yoyofangliu
• 0
1
vote
2
replies
2.0k
views
Error in Adding 1000Genomes Ancestral Allele info: Using VCF tools fill-aa
vcftools
samtools
faidx
tabix
1000Genomes
updated 6 days ago by
barslmn
★ 1.5k • written 5.6 years ago by
shrutishreyajha
▴ 10
3
votes
8
replies
1.7k
views
What is the minimum system requement for oxford nanopore read assembly
Assembly
updated 3 days ago by
Ram
39k • written 4.6 years ago by
nagendranp1991
• 0
0
votes
2
replies
1.7k
views
Fourfold degenerate codons in VCF File
vcf
genome
updated 2 days ago by
Ram
39k • written 4.4 years ago by
crippa.to
• 0
0
votes
4
replies
1.6k
views
Extra header column stopping EMMAX (C), but not seen in input files
emmax
genomics
Cpp
plink
GWAS
updated 6 days ago by
Ram
39k • written 5.3 years ago by
michael.nagle
▴ 100
0
votes
1
reply
1.6k
views
project_tree_builder.exe not found, problem in configuring build tree of NCBI c++ toolkit
cpp
toolkit
blast
NCBI
updated 6 days ago by
Ram
39k • written 7.4 years ago by
arfaj a
▴ 10
2
votes
7
replies
1.5k
views
Technology Stack of NCBI (Genbank, GEO, etc.)
sequence
ncbi
gene
genbank
updated 6 days ago by
Ram
39k • written 5.2 years ago by
navela78
▴ 70
0
votes
0
replies
1.5k
views
CD-hit records matching and parsing
bash
python
cd-hit
text-processing
updated 2 days ago by
Ram
39k • written 4.2 years ago by
mnmalash
• 0
0
votes
0
replies
1.4k
views
envelope and alignment coordinates in hmmsearch result
hmmer
sequence
alignment
hmmsearch
updated 2 days ago by
Ram
39k • written 4.4 years ago by
sanjeet00001992
• 0
0
votes
3
replies
1.4k
views
SNPEff not showing SNP
snpEff
variant-annotation
SNP
updated 6 days ago by
Ram
39k • written 5.1 years ago by
sanjay.bpkihs
• 0
1
vote
5
replies
1.3k
views
WGCNA Co-expression network analysis on cuffdiff output
wgcna
cuffdiff
updated 4 days ago by
Ram
39k • written 4.7 years ago by
sbb
▴ 10
1
vote
1
reply
1.3k
views
Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
Bash
Shell
HISAT2
updated 2 days ago by
Ram
39k • written 4.3 years ago by
RNAseqer
▴ 240
0
votes
3
replies
1.3k
views
Cannot open BAM files with the SeqAn library
cpp
seqan
Bam
sequencing
updated 6 days ago by
Ram
39k • written 5.2 years ago by
omariqbal2017
• 0
0
votes
4
replies
1.3k
views
File not found error on program installation.
samtools
htslib
Cpp
updated 6 days ago by
Ram
39k • written 3.6 years ago by
M.O.L.S
▴ 100
3
votes
4
replies
1.3k
views
fastPHASE -F provided to estimate haplotype frequencies, but no freqs in output
genomics
phasing
fastPHASE
updated 6 days ago by
Ram
39k • written 5.2 years ago by
lakemonster
▴ 10
1
vote
0
replies
1.2k
views
Align two single cell experiments
R
single-cell
updated 3 days ago by
Ram
39k • written 4.5 years ago by
elb
▴ 230
1
vote
0
replies
1.2k
views
sequence alignment using edlib c++ library
cpp
alignment
updated 6 days ago by
Ram
39k • written 4.8 years ago by
BDK_compbio
▴ 130
0
votes
6
replies
1.0k
views
How do I tell piRNA population suppress TEs in a bed file?
mapping
piRNAs
TEs
updated 4 days ago by
Ram
39k • written 4.8 years ago by
jaqx008
▴ 110
0
votes
0
replies
987
views
FRMA processing on two different datasets of affy u133A not same dimensions
u133A
R
frma
affy
updated 2 days ago by
Ram
39k • written 4.2 years ago by
jmannhei
▴ 10
0
votes
3
replies
986
views
Explanation? Read depth, quality, and assembly accuracy in Methylome analysis context
Assembly
genome
methylation
updated 2 days ago by
Ram
39k • written 4.3 years ago by
davidfarr01
▴ 10
1
vote
1
reply
984
views
cfDNA target seq vs. cfDNA WES
cfDNA
updated 4 days ago by
Ram
39k • written 4.9 years ago by
genetic
▴ 40
1
vote
4
replies
956
views
Simulate the sequence data
next-gen-sequencing
genetics
updated 6 days ago by
Ram
39k • written 5.1 years ago by
bha
▴ 80
0
votes
5
replies
943
views
Bioinformatics conference with possible publication
conference
updated 3 days ago by
Ram
39k • written 4.7 years ago by
bharata1803
▴ 550
0
votes
3
replies
939
views
Sorting by Prefix Reversal (or Flipping Pancakes) approximation
algorithms
updated 3 days ago by
Ram
39k • written 4.5 years ago by
Gustavo Temple
• 0
0
votes
1
reply
931
views
Questions about assembly of large metagenomics dataset
assembly
metagenomics
megahit
updated 3 days ago by
Ram
39k • written 4.5 years ago by
zorrilla
• 0
0
votes
2
replies
927
views
what do you mean by segment pairs
rna
protein
updated 2 days ago by
Ram
39k • written 4.3 years ago by
a4appy23
▴ 50
2
votes
3
replies
859
views
Freebayes command stopped due to lack of space
freebayes
SNP-calling
updated 4 days ago by
Ram
39k • written 5.0 years ago by
amcheroo
• 0
7
votes
12
replies
820
views
Integrated genes from bulk RNA seq and ATAC seq
bulk-RNA
integrated
ATAC-seq
updated 4 days ago by
Sasha
▴ 180 • written 10 days ago by
Chris
▴ 100
0
votes
0
replies
817
views
How many works can clustalw can support at the same time?
clustalw
updated 5 days ago by
Ram
39k • written 5.0 years ago by
ricfoz
▴ 80
0
votes
2
replies
805
views
How to get a list of aligned read and reference positions using samtools
samtools
api
htslib
Cpp
c
updated 6 days ago by
Ram
39k • written 3.1 years ago by
Aref.Ariyapour
• 0
2
votes
2
replies
765
views
Final year project query
project
updated 3 days ago by
Ram
39k • written 4.5 years ago by
talhar123456
• 0
1
vote
3
replies
752
views
Stratify phylogeny based on variables - e.g. which ST are represented by high % males
phylogeny
statistics
updated 2 days ago by
Ram
39k • written 4.3 years ago by
kalfsnes
▴ 10
0
votes
0
replies
733
views
Data base or computational tool to help predict if two predicted interacting surface proteins are located on separate cells or on the same cell?
genome
RNA-Seq
updated 2 days ago by
Ram
39k • written 4.3 years ago by
charlesgwellem
• 0
0
votes
0
replies
673
views
Brownian motion : Understanding the output of mvBM function.?
Phylogeny
Brownian
updated 3 days ago by
Ram
39k • written 4.5 years ago by
naveen_gabriel
• 0
0
votes
0
replies
665
views
How to calculate the input-subtract signal for a specific enhancer region
next-gen-sequencing
ChIP-Seq
updated 2 days ago by
Ram
39k • written 4.3 years ago by
biofandd
• 0
0
votes
1
reply
638
views
I'm an iOS developer looking to contribute, where can I go to look?
mobile-development
updated 6 days ago by
Ram
39k • written 5.2 years ago by
mdbiofx
• 0
1
vote
1
reply
636
views
How to determine seq technology used in genome assembly?
sequencing
updated 6 days ago by
Ram
39k • written 5.2 years ago by
maximilian.mayerhofer
▴ 30
0
votes
0
replies
629
views
Need open dataset of hydrocarbons in SMILE/ Chemfig/ Tex
latex
chemfig
smile
dataset
updated 2 days ago by
Ram
39k • written 4.3 years ago by
pgp14.aseem
• 0
0
votes
0
replies
594
views
Htslib c++ library faidx fetch region
samtools
cpp
faidx
htslib
updated 6 days ago by
Ram
39k • written 2.6 years ago by
rah
▴ 20
0
votes
0
replies
574
views
Genome size statistical analysis
statistics
genomics
updated 4 days ago by
Ram
39k • written 5.0 years ago by
Mohak
▴ 20
0
votes
0
replies
538
views
A way to compare genomic sequences with SNPs with sequences for allelic variants to identify genotype for an individual using Plink
snp
PLINK
alignment
sequencing
updated 2 days ago by
Ram
39k • written 4.4 years ago by
madeline.robinson
• 0
4
votes
6
replies
511
views
How to pass from DNA to AA fasta
genetics
updated 6 days ago by
Buffo
★ 2.2k • written 9 days ago by
Anderson Stiward
• 0
4
votes
8
replies
509
views
Error while running nf-core/rnaseq pipeline
nf-core
RNA-seq
5 days ago by
eesha28112001
• 0
0
votes
0
replies
507
views
Can I send my PyMol results to a web-page as a result for a submitted query? If not, how can I get a 3d render of a protein as a result for a user su…
protein-structure
pymol
protein
pdb
python
2 days ago by
Aatif Hashmi
• 0
119 results • Page
1 of 3
Recent Votes
A: how to count variants par sample per chromosome in a vcf file?
Comment: DEgs RNAseq
Answer: ScRNA data
Answer: extract all fasta sequence from db v5
Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, but the Max expression are near 20,000
Comment: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
Answer: Does the RNAseq data normal if the TPM value 3rd Qutile expression is near 10, b
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Recent Replies
Comment: Error in download library file in expression console software
by
GenoMax
129k
What software is this referring to?
Comment: Single cell chemistry
by
GenoMax
129k
As you can see the data is one base short. If cell ranger is unable to analyze the data you may need to look elsewhere.
Comment: Bioinformatics Master's Student
by
Mensur Dlakic
★ 23k
`Bioinformatics Master's Student` is not an informative title for your question. I imagine most people will ignore it by assuming that this…
Comment: Why coordinate sort is required in sambamba depths?
by
Pierre Lindenbaum
154k
> what coordinate sorting is exactly? https://www.biostars.org/p/319730/#319750 > Why coordinate-sort is required coordinate sort is de …
Comment: Bioinformatics Master's Student
by
Nada
• 0
why the read is like this ?? I know I should contains (ATGC) not (T2200330123010111..03100022.....023..02.....011022.)
Answer: Bioinformatics Master's Student
by
ATpoint
72k
It's a fastq file. So what is the question?
Comment: Single cell chemistry
by
swbarnes2
13k
As far as I know, v2 must mean 10x. But if it the cell barcode + umi is 26 bases, you don't have that.
Comment: best annotation approach for peaks
by
Chironex
▴ 40
Hi, I don't understand why, if I change TSS +1000/-1000 or +3000/-3000 or +10.000/-10.000 the number of regions annotated is the same. More…
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
Thank you, I will check it out
Comment: I need help with a methyl array data analysis
by
Ahmad
▴ 10
I actually have replicates. thank you
Comment: Why are some WES VCFs larger than others?
by
Jeremy Leipzig
21k
"It's not a gvcf with site coverage for the entire cohort, I called the variants myself" This sentence doesn't make sense to me. gVCFs are …
Comment: I need help with a methyl array data analysis
by
Dr William Klubinski
▴ 20
It seems the data appears to be in the beta value format (?), which represents the proportion of methylated probe intensity over the total …
Comment: problem of Global Biobank Meta-analysis Initiative
by
Fabio Marroni
★ 3.0k
Hi, can you please add the link to the page you mentioned? AFAIK some data have restricted access. Maybe full GWAS data belongs to this cat…
Comment: I need help with a methyl array data analysis
by
prasundutta87
▴ 650
Did you come across this? https://www.biostars.org/p/432297/ Regards, Prasun
Comment: Single cell chemistry
by
David
• 0
Unlikely, this data came from a experienced sequencing team, I 'm the inexperienced data analyst. I'm not sure if these samples are 10x, …
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