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1,000 results • Page
5 of 20
Sort: replies
Rank
Views
Votes
Replies
1
vote
7
replies
1.7k
views
cannot execute binary file: Exec format error
linux
updated 9 months ago by
Michael
54k • written 9 months ago by
applepie
• 0
0
votes
7
replies
789
views
Search for specific SNPs in VCF files of patients.
ANNOVAR
vcftools
bcftools
GATK
VCF
updated 4 months ago by
Ram
43k • written 5 months ago by
iarmir
▴ 10
1
vote
7
replies
1.6k
views
Typical percentage of multimapping reads in human rna-seq?
RNA-seq
alignment
Bowtie2
STAR
updated 10 months ago by
GenoMax
142k • written 11 months ago by
srhic
▴ 60
0
votes
7
replies
1.6k
views
Comparing the GVF file & VCF file
gvf
dna
vcf
ensembl
ngs
updated 6 months ago by
mickeykuo129
• 0 • written 16 months ago by
Alireza
▴ 30
0
votes
7
replies
730
views
create an all against all fasta file
python
fasta
updated 7 months ago by
Ram
43k • written 7 months ago by
Chu
• 0
1
vote
7
replies
953
views
Filtering a 10X generated .bam file based on a list of barcodes
snRNA-seq
scRNA-seq
samtools
BAM
RNA-seq
6 months ago by
jhnicolas
• 0
4
votes
7
replies
2.7k
views
low bootstrap value?
phylogeny
genome
alignment
updated 11 months ago by
Ram
43k • written 4.9 years ago by
Kumar
▴ 120
0
votes
7
replies
468
views
Salmon Quantification in Alignment based-mode
Salmon
RNA-seq
TPM
updated 7 weeks ago by
GenoMax
142k • written 7 weeks ago by
Patadu94
• 0
1
vote
7
replies
1.9k
views
for loop in a bash script
bash
updated 11 months ago by
Ram
43k • written 2.6 years ago by
Erika
• 0
4
votes
7
replies
845
views
SNP IDs
SNP
6 months ago by
kl
▴ 10
7
votes
7
replies
5.0k
views
RNA-Seq time series analysis using a DESeq2 spline approach yields far too many significant genes
splines
DESeq2
time-series
RNA-Seq
updated 11 months ago by
Ram
43k • written 5.3 years ago by
stu111538
▴ 80
2
votes
7
replies
1.4k
views
VG mapping paired-end reads: error [xg]: multiple hits for XXX
variation-graph
reads
pangenome
vg
paired-end
8 months ago by
nkls063408
• 0
4
votes
7
replies
636
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 5 weeks ago by
Ram
43k • written 5 weeks ago by
AHerik
▴ 20
5
votes
7
replies
874
views
About the value in bigwig file
ATAC-seq
updated 10 months ago by
rfran010
▴ 900 • written 10 months ago by
Chris
▴ 280
4
votes
7
replies
826
views
Help with weighted nearest neighbor analysis
seurat
single-cell
8 months ago by
Chris
▴ 280
3
votes
7
replies
1.4k
views
VG Giraffe multi-mapped reads and definition for MAPQ score
vg
9 months ago by
Hendricks27
• 0
2
votes
7
replies
673
views
Maker: Combining Annotations for Large Genomes
Maker
Genome
annotation
3 months ago by
Kinoppy
• 0
1
vote
7
replies
4.1k
views
Adjust width of annotations in pheatmap
R
heatmap
updated 7 months ago by
Kevin Blighe
88k • written 5.5 years ago by
divya.nandakumar
▴ 30
0
votes
7
replies
462
views
DESeq: too low p-value for RNAseq
R
DESeq
p-value
RNA-seq
FDR
updated 6 weeks ago by
Papyrus
★ 2.9k • written 6 weeks ago by
doramora
▴ 10
0
votes
7
replies
3.8k
views
MUMmer plot visualization
MUMmer plot
updated 3 months ago by
Carlos
• 0 • written 3.3 years ago by
rthapa
▴ 90
0
votes
7
replies
2.0k
views
CIBERSORTx error: 'x' must be an array of at least two dimensions
matrix
CIBERSORTx
signature
updated 6 months ago by
kkj3083
• 0 • written 22 months ago by
Jie
• 0
0
votes
7
replies
1.0k
views
All question mark quality scores on several studies
quality-score
shotgun
illumina
updated 11 months ago by
Ram
43k • written 11 months ago by
Jonathan
▴ 10
4
votes
7
replies
2.4k
views
Batch effects vs biological variables
Batch-effect
DESeq2
combat_seq
updated 5 weeks ago by
Ram
43k • written 3.7 years ago by
l.uva
▴ 20
3
votes
7
replies
546
views
How does kallisto handle multi mapped reads?
kallisto
updated 12 weeks ago by
dsull
★ 6.0k • written 12 weeks ago by
bioinfo
▴ 150
3
votes
7
replies
2.6k
views
6 follow
Online BLAST search using R
BLAST
R
updated 3 months ago by
SequenceServer
▴ 140 • written 2.8 years ago by
accibio
▴ 20
0
votes
7
replies
1.0k
views
Issue with Merging BCF Files: Invalid INFO id Error
bcftools
updated 6 months ago by
Ram
43k • written 6 months ago by
George
▴ 10
2
votes
7
replies
1.1k
views
error: BLAST database name is missing. Please edit provean.sh file to add the name.
provean
error
updated 8 months ago by
GenoMax
142k • written 9 months ago by
elham
• 0
2
votes
7
replies
961
views
Removing duplicates
duplicates
ONT
minimap2
updated 4 weeks ago by
noodle
▴ 580 • written 4 weeks ago by
quentinperriere
• 0
4
votes
7
replies
795
views
Alternative for grep in a for loop
linux
updated 7 months ago by
Ram
43k • written 7 months ago by
Prangan
▴ 20
0
votes
7
replies
483
views
1000 Genome: Cause of duplicate variants with different genotypes
CrossMap
1000Genome
1000G
updated 3 months ago by
Giulio Genovese
▴ 400 • written 3 months ago by
JourneyToAbyss
▴ 210
1
vote
7
replies
928
views
GATK Mutect2 Input files reference and features have incompatible contigs: No overlapping contigs found.
hg19
Mutect2
GATK
Variant-Calling
updated 7 weeks ago by
Ram
43k • written 9 months ago by
Manuel Sokolov Ravasqueira
▴ 100
2
votes
7
replies
1.3k
views
Weirdness in annotation (missing allele frequencies)
allele-frequency
gnomad
annovar
updated 7 months ago by
Ram
43k • written 7 months ago by
Can Abdullah
• 0
6
votes
7
replies
602
views
NF-Core ampliseq - Rscript markdown error
nf-core
ampliseq
updated 4 months ago by
Michael
54k • written 4 months ago by
nermze
• 0
3
votes
7
replies
1.5k
views
Find 3'UTRs for species
Assembly
alignment
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Palgrave
▴ 110
8
votes
7
replies
598
views
adjusting parameters in ViolinPlot did not work
single-cell
updated 3 months ago by
Ram
43k • written 3 months ago by
synat.keam
▴ 100
5
votes
7
replies
986
views
Salmon index not progressing
salmon
updated 7 months ago by
Michael
54k • written 8 months ago by
camillab.
▴ 160
6
votes
7
replies
1.8k
views
Reference genome for RNA-Seq reads decontamination
FastQ_Screen
RNA-Seq
updated 8 months ago by
Ram
43k • written 4.2 years ago by
gnmcsbnfrmtcsclb
▴ 70
0
votes
7
replies
408
views
single nuclei sequencing questions
fastq
single-nuclei-sequencing
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
Long
• 0
1
vote
7
replies
924
views
help with weird PCA? (vcfR)
vcftools
vcfR
R
6 months ago by
MaeBH
• 0
0
votes
7
replies
1.9k
views
monocle single cell differential expression: error message for HSMM <- estimateDispersions(HSMM) command
single-cell
monocle
updated 10 months ago by
benformatics
3.9k • written 2.4 years ago by
bioinformatics
▴ 40
4
votes
7
replies
646
views
Can any JBrowse2 tracks show multiple colors for reads at different nucleotide positions?
JBrowse
JBrowse2
updated 6 weeks ago by
cmdcolin
★ 3.8k • written 7 weeks ago by
I0110
▴ 140
4
votes
7
replies
1.2k
views
Statistical test to compare data across timepoints
Statistics
updated 7 months ago by
Matthias Zepper
4.6k • written 7 months ago by
Sean
▴ 20
0
votes
7
replies
6.1k
views
Pre-processing of RNA-Seq data for WGCNA
RNA-Seq
WGCNA
removeBatchEffect
DESeq2
updated 4 weeks ago by
Ram
43k • written 7.7 years ago by
gokce.ouz
▴ 70
0
votes
7
replies
1.3k
views
FACS (Fluorescence-activated cell sorting NOT cyTOF),Automating the removal of dead and duplicated cells
FACS
updated 7 months ago by
rfran010
▴ 900 • written 8 months ago by
ccbb7aab4
▴ 20
1
vote
7
replies
1.3k
views
For loop STAR not working
RNA-Seq
STAR
updated 11 months ago by
Ram
43k • written 2.9 years ago by
vinishavvenugopal
▴ 30
5
votes
7
replies
500
views
RNA seq analysis
DESeq
RNA-seq
3 days ago by
Jacek
▴ 20
3
votes
7
replies
523
views
Snakemake rule that runs an assessment for once after completing other previous rules
snakemake
10 weeks ago by
Fadlilah
▴ 10
0
votes
7
replies
961
views
For loop RNA Sequencing alignment
RNA
STAR
updated 11 months ago by
Ram
43k • written 19 months ago by
kcarey
• 0
1
vote
7
replies
1.9k
views
Filtering a VCF by "IMP" flag in INFO with bcftools
vcf
bcftools
updated 11 months ago by
Ram
43k • written 19 months ago by
Vanish007
▴ 40
0
votes
7
replies
7.3k
views
Problem in in alignment by muscle
sequence
muscle
alignment
updated 10 months ago by
Ram
43k • written 6.8 years ago by
misbahabas
▴ 70
1,000 results • Page
5 of 20
Recent Votes
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Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
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Recent Replies
Comment: Error in CIBERSORTx ($ operator is invalid for atomic vectors)
by
nguyenn6
• 0
did you ever figure it out? i'm having the same issue.
Comment: Traveler with Infernal mapping failed
by
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• 0
Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email help@r2dt.bio with your input seque…
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by
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▴ 50
Fixed the issue by updating nucmer version.
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Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
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you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
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What is your question? It's unclear.
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One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
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See the exploration of isoform estimation precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.…
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Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
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Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
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This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
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