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4
votes
9
replies
897
views
Producing such a plot in r
r
updated 3.5 years ago by 13k • written 3.5 years ago by ★ 4.3k
4
votes
4
replies
802
views
Extracting the number of specific samples
R reshape dplyr
3.5 years ago by zizigolu ★ 4.3k
0
votes
3
replies
2.1k
views
Adding box plot for gene expression to complexheatmap
r complexheatmap
updated 3.5 years ago by 20 • written 3.7 years ago by ★ 4.3k
4
votes
9
replies
1.5k
views
WES or WGS
exome genome ngs
updated 3.6 years ago by ★ 2.9k • written 3.6 years ago by ★ 4.3k
0
votes
0
replies
596
views
What does they mean by exome size here
wgs wes
3.6 years ago by zizigolu ★ 4.3k
2
votes
5
replies
1.8k
views
Installing qgraph package on Mac
r
3.7 years ago by zizigolu ★ 4.3k
3
votes
9
replies
1.3k
views
Converting a data frame to boolean values in R
dplyr reshape r software error
updated 3.7 years ago by 13k • written 3.7 years ago by ★ 4.3k
1
vote
4
replies
3.4k
views
Downloading R 4.0.0
r
3.7 years ago by zizigolu ★ 4.3k
2
votes
6
replies
921
views
Running a code in batch mode on a list of files
AWK GREP SED
3.7 years ago by zizigolu ★ 4.3k
5
votes
2
replies
1.3k
views
Installing package - RCircos 1.1.3
R RCircos
updated 3.7 years ago by 11k • written 3.7 years ago by ★ 4.3k
1
vote
3
replies
1.1k
views
Making a legoplot of mutational signatures
r
3.7 years ago by zizigolu ★ 4.3k
5
votes
9
replies
4.0k
views
Getting TMM from DESeq2
R RNA-Seq
updated 3.7 years ago by 87k • written 3.7 years ago by ★ 4.3k
8
votes
7
replies
1.8k
views
Changing colour of dots group wise
R ggplot2
3.7 years ago by zizigolu ★ 4.3k
2
votes
8
replies
3.3k
views
Adding gene set to GSVA
GSVA
updated 3.7 years ago by 35k • written 3.7 years ago by ★ 4.3k
4
votes
11
replies
1.3k
views
Getting total sequenced megabases for each sample
genome vcf
3.8 years ago by zizigolu ★ 4.3k
0
votes
0
replies
670
views
Help with understanding this paragraph of this paper
P-value Fisher's exact test
3.8 years ago by zizigolu ★ 4.3k
4
votes
11
replies
3.6k
views
7 follow
Getting coding sequence length
NCBI Gene CDS
updated 23 months ago by ▴ 360 • written 3.8 years ago by ★ 4.3k
0
votes
0
replies
734
views
Retrieving drug response from GDCC
Drug GDCC Sanger
3.9 years ago by zizigolu ★ 4.3k
0
votes
9
replies
3.1k
views
Putting bedtools in the path
bedtools bedops samtools
3.9 years ago by zizigolu ★ 4.3k
2
votes
6
replies
2.0k
views
I need help with some explanation
cancer WGS VAF evolution
updated 3.9 years ago by 20 • written 4.0 years ago by ★ 4.3k
1
vote
3
replies
613
views
Do tools doing clonal evolution analysis work on unmatched samples too
CNV WGS software scieclone
updated 4.0 years ago by 20 • written 4.0 years ago by ★ 4.3k
0
votes
0
replies
849
views
How we know if mutations in a cluster are clonal or sub-clonal
sciclone VAF CCF CNV
4.0 years ago by zizigolu ★ 4.3k
3
votes
1
reply
529
views
Getting this information from WGS
WGS
4.0 years ago by zizigolu ★ 4.3k
0
votes
10
replies
3.9k
views
Some clarification on Strelka output
Strelka vcf VAF WGS
updated 4.0 years ago by ▴ 40 • written 4.3 years ago by ★ 4.3k
8
votes
9
replies
1.7k
views
Cancer signature version 3
mutation vcf genome COSMIC
updated 4.0 years ago by 82k • written 4.0 years ago by ★ 4.3k
2
votes
2
replies
612
views
Calculating human genome covering each segment
WGS CNV Genome
4.0 years ago by zizigolu ★ 4.3k
2
votes
2
replies
1.9k
views
ploting a network of mRNAs and miRNAs
miRNA target R
updated 4.1 years ago by 20 • written 7.1 years ago by ★ 4.3k
6
votes
16
replies
17k
views
error in R when installing DESeq2 package
software error R
updated 4.1 years ago by • 0 • written 8.7 years ago by ★ 4.3k
19
votes
14
replies
15k
views
how I can read CEL files with affy
R software error
updated 4.1 years ago by 20 • written 7.5 years ago by ★ 4.3k
2
votes
7
replies
1.2k
views
Alternative allele in VEP output
VEP vcf WGS
updated 4.1 years ago by ★ 2.4k • written 4.1 years ago by ★ 4.3k
2
votes
9
replies
1.2k
views
An individual gene in different peak of GISTIC
GISTIC WGS
4.1 years ago by zizigolu ★ 4.3k
0
votes
2
replies
579
views
Explaining relation of WGS and transcriptome
wgs RNA-Seq
updated 4.1 years ago by 14k • written 4.1 years ago by ★ 4.3k
3
votes
1
reply
745
views
Confusion about Limma group design
r limma
updated 4.1 years ago by 82k • written 4.1 years ago by ★ 4.3k
4
votes
1
reply
1.3k
views
RNAseq deconvolution to immune cells
RNA-Seq R
updated 4.2 years ago by 87k • written 4.2 years ago by ★ 4.3k
18
votes
7
replies
1.2k
views
6 follow
Doing differential gene expression without knowing sample classes
RNA-Seq deseq2 edger
4.2 years ago by zizigolu ★ 4.3k
2
votes
4
replies
2.1k
views
converging Agilent prob name to Agilent ID
gene
updated 4.2 years ago by 20 • written 7.5 years ago by ★ 4.3k
2
votes
1
reply
799
views
Getting a list of tumor suppressors
gene
updated 4.2 years ago by ▴ 1000 • written 4.2 years ago by ★ 4.3k
1
vote
0
replies
1.0k
views
Ignoring copy number when calculating VAF
r copy number variant allele frequency
4.2 years ago by zizigolu ★ 4.3k
1
vote
2
replies
846
views
Making a heatmap with long format data
r
4.2 years ago by zizigolu ★ 4.3k
7
votes
7
replies
1.2k
views
Converting peak ID to gene symbol
Proteomics ID conversion
4.2 years ago by zizigolu ★ 4.3k
0
votes
2
replies
1.4k
views
Defining conditions in EBSeq-HMM
rna-seq R EBSeq-HMM
updated 4.3 years ago by • 0 • written 6.1 years ago by ★ 4.3k
2
votes
1
reply
867
views
How I deal with redundant genes in microarray
microarray r transcriptomics affy
4.3 years ago by zizigolu ★ 4.3k
8
votes
5
replies
2.7k
views
Should I keep up with random contigs in human genome
WGS vcf somatic variation
updated 4.3 years ago by 47k • written 4.3 years ago by ★ 4.3k
0
votes
6
replies
1.5k
views
Converting this matrix to a binary matrix
r
updated 4.3 years ago by 20 • written 4.7 years ago by ★ 4.3k
4
votes
11
replies
1.3k
views
Is this range of VAF is ordinary?
WGS VCF VAF
4.3 years ago by zizigolu ★ 4.3k
2
votes
2
replies
3.3k
views
Some interpretation of Strelka output
WGS INDEL STRELKA
updated 4.3 years ago by 82k • written 4.3 years ago by ★ 4.3k
0
votes
0
replies
806
views
It is normal to get nothing for VAF field for INDEL
WGS INDEL CNV
4.3 years ago by zizigolu ★ 4.3k
4
votes
9
replies
1.3k
views
What does mean when people say AAB copy-number state?
copy number WGS
updated 4.3 years ago by ▴ 920 • written 4.3 years ago by ★ 4.3k
2
votes
7
replies
2.5k
views
Creating marker file for GICTIC2
GISTIC2 Copy number Segmentation WGS
updated 4.4 years ago by • 0 • written 5.0 years ago by ★ 4.3k
0
votes
0
replies
666
views
Creating a marker file for copy number analysis
r genomics bash
4.4 years ago by zizigolu ★ 4.3k
433 results • Page 2 of 9
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