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3
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1
reply
587
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What is the expected sequencing output for a Hi-C library?
sequencing hi-c illumina yield
updated 14 months ago by 82k • written 14 months ago by ★ 1.8k
3
votes
3
replies
1.0k
views
fasterq-dump not downloading both reads of a pair
fasterq-dump
updated 13 months ago by 43k • written 18 months ago by ★ 1.8k
20
votes
10
replies
13k
views
How To Use The Kegg Xml Files?
kegg pathway
updated 17 months ago by 43k • written 13.8 years ago by ★ 1.8k
10
votes
4
replies
6.8k
views
How To Build A Custom Model File In Genemark?
gene prediction model
updated 5.7 years ago by 43k • written 13.9 years ago by ★ 1.8k
164
votes
70
replies
61k
views
34 follow
How To Efficiently Parse A Huge Fastq File?
fastq next-gen-sequencing
updated 5 weeks ago by 43k • written 12.8 years ago by ★ 1.8k
2
votes
1
reply
2.1k
views
Assembly Strategy
illumina
updated 10.2 years ago by 8.2k • written 10.2 years ago by ★ 1.8k
14
votes
6
replies
4.0k
views
Data Management System For Bioinformatics?
updated 10.3 years ago by 161k • written 10.3 years ago by ★ 1.8k
6
votes
4
replies
5.2k
views
What Is The Default Quality Encoding Expected By Bwa?
bwa illumina
updated 10.4 years ago by 28k • written 12.0 years ago by ★ 1.8k
1
vote
3
replies
3.9k
views
Possible Gene Unflattening Error In Bp_Genbank2Gff3.Pl Bioperl Script
gff3 genbank bioperl conversion ensembl
updated 10.5 years ago by 23k • written 10.5 years ago by ★ 1.8k
6
votes
10
replies
5.5k
views
How To Blast A Nucleotide Profile (Pssm) Against A Nucleotide Database?
blast pssm blastn
updated 10.6 years ago by ▴ 980 • written 10.6 years ago by ★ 1.8k
41
votes
29
replies
15k
views
17 follow
Which Assembler To Use For Metagenomic Sequences?
metagenomics assembly
updated 10.7 years ago by ★ 1.1k • written 14.1 years ago by ★ 1.8k
42
votes
26
replies
54k
views
11 follow
How To Interpret A T-Test Output Produced By R
statistics
updated 10.8 years ago by 20 • written 11.8 years ago by ★ 1.8k
8
votes
6
replies
13k
views
How To Create A Phylogram In Phylip With Bootstrap Values On It?
updated 10.9 years ago by ▴ 10 • written 12.9 years ago by ★ 1.8k
6
votes
4
replies
8.9k
views
How To Get Bootstrap Values From A Tree Generated By The Consense Program (Phylip)?
updated 11.3 years ago by 1.9k • written 13.2 years ago by ★ 1.8k
3
votes
8
replies
2.8k
views
How To Get All Different Variants Of A Peptide?
perl
updated 11.8 years ago by ★ 2.9k • written 11.8 years ago by ★ 1.8k
3
votes
1
reply
4.1k
views
Trinity Output Filtering
trinity filtering
updated 12.0 years ago by 8.3k • written 12.0 years ago by ★ 1.8k
9
votes
1
reply
3.5k
views
What Does A "*" (Star) Mean In Mpileup'S "Read Bases" Column (The 5Th Column)?
mpileup
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ★ 1.8k
4
votes
5
replies
3.2k
views
How To Calculate Number Of Bases Found In Introns/Cdss/Intergenic Space
intron cds
updated 12.1 years ago by 100k • written 12.1 years ago by ★ 1.8k
15
votes
6
replies
5.7k
views
Can A Cds Be Also An Intron?
gff intron exon cds
updated 12.1 years ago by ▴ 10 • written 12.1 years ago by ★ 1.8k
28
votes
16
replies
9.3k
views
7 follow
What Does Bwa'S '-N' Parameter Mean?
bwa
updated 8 months ago by ▴ 20 • written 12.3 years ago by ★ 1.8k
43
votes
2
replies
32k
views
What Does The "Proper Pair" Bitwise Flag Mean In A Sam File?
sam samtools
updated 12.7 years ago by ★ 1.3k • written 13.0 years ago by ★ 1.8k
6
votes
1
reply
5.3k
views
Should I Be Using K-Mer Coverage In Velvet Parameters Instead Of Nucleotide Coverage?
velvet coverage assembly
updated 12.8 years ago by 22k • written 12.8 years ago by ★ 1.8k
12
votes
12
replies
9.8k
views
How To End Trim Sequences Using Prinseq?
trimming quality
updated 12.8 years ago by 22k • written 12.8 years ago by ★ 1.8k
41
votes
16
replies
15k
views
8 follow
Should I Remove All Positions Containing A Gap In A Multiple Alignment Prior To Creating A Phylogenetic Tree?
phylogenetics multiple
updated 12.8 years ago by ▴ 10 • written 12.8 years ago by ★ 1.8k
13
votes
1
reply
5.9k
views
What Programs Are There For Transcriptome Assembly?
rna transcriptome assembly
updated 12.9 years ago by 4.8k • written 12.9 years ago by ★ 1.8k
10
votes
5
replies
4.6k
views
How To Find Protein Clusters/Families?
clustering protein
updated 13.6 years ago by ★ 3.3k • written 13.6 years ago by ★ 1.8k
30
votes
6
replies
3.3k
views
What Are The Computing Requirements For Handling Illumina-Generated Reads?
illumina
updated 13.7 years ago by ★ 1.1k • written 13.7 years ago by ★ 1.8k
36
votes
16
replies
7.3k
views
9 follow
How To Cluster 454 Reads?
clustering short
updated 13.8 years ago by 2.3k • written 13.8 years ago by ★ 1.8k
10
votes
7
replies
4.0k
views
How To See Which Proteins / Enzymes Are Present In A Pathway (Using Resources In Kegg)?
pathway kegg
updated 13.9 years ago by 18k • written 13.9 years ago by ★ 1.8k
12
votes
8
replies
12k
views
How To Do Pathway Mapping Using Kegg/Kaas?
kegg pathway
updated 13.9 years ago by ▴ 770 • written 13.9 years ago by ★ 1.8k
11
votes
7
replies
7.6k
views
One-Class Libsvm Classifiers
metagenomics short
updated 14.0 years ago by ★ 3.3k • written 14.0 years ago by ★ 1.8k
11
votes
8
replies
14k
views
Svm-Predict Input File Format
short classification metagenomics
14.0 years ago by Panos ★ 1.8k
32 results • Page 1 of 1
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