Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
2
votes
5
replies
3.0k
views
Filter Gtf With Another Gtf
gtf filter
updated 9.1 years ago by 20 • written 11.0 years ago by 11k
4
votes
5
replies
3.8k
views
How To Find Known Local Secondary Structures In Rna
rna structure
updated 9.2 years ago by ▴ 20 • written 10.7 years ago by 11k
0
votes
0
replies
2.3k
views
Genomic data (DNA-Seq, Exome, RNA-Seq, ...) to infer metastasis phylogenetic tree
metastasis phylogenetic
updated 2.0 years ago by 43k • written 9.2 years ago by 11k
1
vote
0
replies
2.2k
views
Is it normal to find mRNA traces in small RNA-Seq ?
smallRNA-Seq mRNA
updated 2.0 years ago by 43k • written 9.2 years ago by 11k
1
vote
7
replies
1.8k
views
Small genomic region proximity enrichment
enrichment genomic proximity
updated 2.2 years ago by 43k • written 9.4 years ago by 11k
4
votes
9
replies
4.2k
views
1 vs Multiple sample expression RNA-Seq analysis
RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by 11k
0
votes
0
replies
2.1k
views
Assess downstream exon expression disturbed by a mutation using RNA-Seq
dexseq exon RNA-Seq mutation
updated 2.2 years ago by 43k • written 9.4 years ago by 11k
11
votes
8
replies
6.6k
views
7 follow
Best Bioinformatic And Molecular Biology Software Package
software molecular viewer subjective
updated 9.4 years ago by • 0 • written 12.6 years ago by 11k
6
votes
6
replies
2.7k
views
How to represent multiple p-values ?
p-values plot
updated 2.3 years ago by 43k • written 9.5 years ago by 11k
6
votes
6
replies
4.5k
views
HIV : gtf or gff annotation
gtf annotation hiv gff
updated 2.5 years ago by 43k • written 9.9 years ago by 11k
2
votes
1
reply
1.3k
views
Recent sequencing platform comparison
plateform sequencing
updated 3.1 years ago by 43k • written 9.6 years ago by 11k
1
vote
1
reply
3.1k
views
Estimate alternative splicing rate using RNA-Seq
RNA-Seq alternativesplicing
updated 3.1 years ago by 43k • written 9.6 years ago by 11k
3
votes
4
replies
5.4k
views
DESeq2 : foldchange calculation with multi-factor design
multifactor deseq2
updated 3.1 years ago by 43k • written 9.6 years ago by 11k
37
votes
8
replies
27k
views
DESeq2 : three factor conditions
mulitpleconditions DESeq2
updated 2.3 years ago by 43k • written 9.6 years ago by 11k
8
votes
5
replies
5.1k
views
How to download a specific sample from TCGA ?
tcga
updated 3.1 years ago by 43k • written 9.6 years ago by 11k
1
vote
5
replies
2.1k
views
Functional consequences of a mutated gene using RNA-Seq
mutation RNA-Seq pathway
updated 2.3 years ago by 43k • written 9.7 years ago by 11k
2
votes
4
replies
3.1k
views
Common target genes
genes pathway target
updated 2.4 years ago by 43k • written 9.7 years ago by 11k
2
votes
5
replies
9.6k
views
bigwig : peak distance from specific genomic region
ChIP-Seq bigwig distance closest bed
updated 2.5 years ago by 43k • written 9.9 years ago by 11k
4
votes
9
replies
3.5k
views
6 follow
Small Genome Mapping Assembly
genome assembly mapping
updated 2.4 years ago by 43k • written 12.5 years ago by 11k
3
votes
6
replies
2.4k
views
How to group/merge genomic positions ?
group position genomic
updated 2.4 years ago by 43k • written 9.8 years ago by 11k
3
votes
4
replies
2.7k
views
how to extract all the genes regulated by a specific gene ?
pathway reactome kegg gene target
updated 2.4 years ago by 43k • written 9.8 years ago by 11k
0
votes
0
replies
2.9k
views
Downstream target genes expression analysis (RNA-Seq)
RNA-Seq downstream targets expression
9.8 years ago by Nicolas Rosewick 11k
14
votes
7
replies
15k
views
Multi Thread Bedtools
bedtools parallel
updated 9.8 years ago by 20 • written 12.4 years ago by 11k
0
votes
1
reply
2.8k
views
Chip-Seq : how to test if several genomic regions are enriched in histone marks
encode enrichment ChIP-Seq peaks bigwig
updated 2.5 years ago by 43k • written 9.9 years ago by 11k
3
votes
4
replies
1.9k
views
Genomic positions enrichement in enhancer
enrichment position ENCODE
updated 2.5 years ago by 43k • written 9.9 years ago by 11k
4
votes
5
replies
4.0k
views
Rna-Seq And Pri-Mirna
rna mirna
updated 9.9 years ago by 20 • written 12.7 years ago by 11k
6
votes
2
replies
3.3k
views
Which Aligner Would You Recommend For Transcriptome Assembly
aligner transcriptome assembly
updated 10.0 years ago by 3.5k • written 11.0 years ago by 11k
13
votes
17
replies
7.2k
views
Pick random position from specific genomic regions
random position bed
updated 2.5 years ago by 43k • written 10.1 years ago by 11k
4
votes
2
replies
3.0k
views
How TCGA generanker works ?
tcga
updated 2.7 years ago by 43k • written 10.1 years ago by 11k
1
vote
4
replies
865
views
Gencode Changelog ?
updated 10.1 years ago by 23k • written 10.1 years ago by 11k
32
votes
10
replies
44k
views
8 follow
Tophat Library-Type : Illumina Truseq Stranded Total Rna Sample Prep Kit
tophat illumina strand
updated 19 months ago by 43k • written 11.2 years ago by 11k
1
vote
3
replies
9.7k
views
Insert Size For Each Bam Entry
bam
updated 10.2 years ago by ★ 2.5k • written 10.2 years ago by 11k
2
votes
3
replies
2.2k
views
Bwa Mem Strange Id
10.2 years ago by Nicolas Rosewick 11k
2
votes
4
replies
4.2k
views
Extract R1 Alignment Informations From Bam
bam
updated 10.2 years ago by 104k • written 10.2 years ago by 11k
0
votes
4
replies
2.3k
views
Tophat Reporting Output Step Is Very Slow
tophat
updated 10.2 years ago by 20 • written 12.0 years ago by 11k
7
votes
12
replies
7.0k
views
Tophat : How Many Reads Are Aligned ?
tophat read counts
updated 10.3 years ago by ▴ 330 • written 12.0 years ago by 11k
3
votes
1
reply
3.3k
views
Bamtools : Extract Sense And Anti-Sense Reads
updated 10.4 years ago by 20 • written 10.4 years ago by 11k
3
votes
2
replies
2.2k
views
Rna Secondary Structure Homolgy Search
rna homology
updated 10.4 years ago by 13k • written 11.2 years ago by 11k
6
votes
1
reply
10k
views
R : Get Gene Symbol From Refseq Id - Biomart Problem
refseq ensembl
updated 3.1 years ago by 43k • written 10.5 years ago by 11k
3
votes
3
replies
2.1k
views
Position Enrichment Test
enrichment test position
updated 10.5 years ago by 26k • written 10.5 years ago by 11k
2
votes
4
replies
6.8k
views
Download Kegg Pathway Figure With Highlighted Genes
kegg
updated 10.6 years ago by ▴ 520 • written 10.6 years ago by 11k
0
votes
2
replies
2.0k
views
Splice Junction Mapper For Dense Genome
genome
updated 10.6 years ago by 20 • written 12.2 years ago by 11k
5
votes
3
replies
8.6k
views
Plot Positions On Chromosomes
plot chromosome position
updated 10.6 years ago by ★ 7.8k • written 10.6 years ago by 11k
0
votes
2
replies
3.3k
views
Bwa : Allow Low Stringency In Alignments
bwa
updated 10.6 years ago by ★ 2.2k • written 10.6 years ago by 11k
2
votes
2
replies
4.5k
views
How To Know From Which File ( R1 Or R2 ) A Read Is Coming From Based On Sam Output
sam
updated 10.6 years ago by 161k • written 10.6 years ago by 11k
0
votes
1
reply
2.6k
views
Local Alignment Of Rna-Seq Data
rna-seq local alignment
10.6 years ago by Nicolas Rosewick 11k
3
votes
4
replies
3.9k
views
Defining Precisely The Genomic Context Based On A Position
position genomic
updated 10.7 years ago by 12k • written 10.7 years ago by 11k
4
votes
2
replies
4.2k
views
Soft Clipping Position
rna-seq
updated 10.7 years ago by 12k • written 10.7 years ago by 11k
0
votes
3
replies
3.2k
views
Rna-Seq : Check For Fusions With A Known Position
fusion rna-seq
updated 10.7 years ago by ▴ 170 • written 10.7 years ago by 11k
0
votes
3
replies
4.0k
views
Intersect Gene Annotation With Specific Position Or Genomic Interval
intersect bedtools
updated 10.7 years ago by 22k • written 10.7 years ago by 11k
211 results • Page 3 of 5
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6