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questions
0
votes
2
replies
348
views
Length Polymorphism using long read Nanopore
genotyping
nanopore
5 months ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
596
views
Issues with Minimap2 and ONT (Nanopore)
minimap
nanopore
8 months ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
472
views
Internal controls/ Reference Samples for Nanopore
nanopore
updated 14 months ago by
dthorbur
★ 2.9k • written 14 months ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
357
views
Identifying Multipartite viruses (Viral Bioinformatics)
genomics
16 months ago by
pixie@bioinfo
★ 1.5k
2
votes
3
replies
1.1k
views
Regarding using a "pseudo reference genome" for aligning short reads
genomics
14 months ago by
pixie@bioinfo
★ 1.5k
3
votes
3
replies
841
views
How to proceed after Kraken2 analysis
rnaseq
kraken
updated 17 months ago by
dthorbur
★ 2.9k • written 17 months ago by
pixie@bioinfo
★ 1.5k
31
votes
11
replies
7.5k
views
8 follow
Basics Of Systems Biology...
network
updated 21 months ago by
bryan.smith4756
• 0 • written 14.7 years ago by
pixie@bioinfo
★ 1.5k
2
votes
1
reply
784
views
Sequence statistics to report viruses (or bacteria and fungi) using Nanopore for diagnostic purpose
nanopore
updated 2.1 years ago by
colindaven
7.4k • written 2.1 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
595
views
Trimming SSR (repetitive primer) sequences
genomics
updated 2.4 years ago by
GenoMax
150k • written 2.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
3
replies
921
views
Calculate distribution of reads over the reference genome
ngs
updated 2.5 years ago by
Joe
22k • written 2.5 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
790
views
Identifying reliable regions of reference genomes
snp
genomics
updated 2.7 years ago by
Dave Carlson
★ 2.1k • written 2.7 years ago by
pixie@bioinfo
★ 1.5k
0
votes
3
replies
974
views
Recovering sequencing reads due to Low-Diversity Illumina Sequencing Libraries
Illumina
mini-seq
updated 2.8 years ago by
GenoMax
150k • written 2.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
512
views
pysam fetch alignments corresponding to a taxid
pysam
samtools
3.0 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
796
views
How to calculate p-value for Network Data (Cluster Detection)
network
correlation
3.0 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
494
views
Diagnostic Plots for SNP quality assesment
vcf
3.2 years ago by
pixie@bioinfo
★ 1.5k
2
votes
1
reply
1.1k
views
VCF file, calculate depth per sample
vcf
bcftools
updated 3.2 years ago by
raphael.B
▴ 530 • written 3.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
974
views
Problem with VCF format while using "VariantAnnotation" R package
vcf
updated 3.2 years ago by
Mark
★ 1.6k • written 3.2 years ago by
pixie@bioinfo
★ 1.5k
8
votes
11
replies
7.6k
views
6 follow
Heatmap In R-Wgcna-->Error While Plotting Tom
r
heatmap
updated 3.3 years ago by
camilo
• 0 • written 11.7 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
525
views
Information about Genotyping by Sequencing (GBS)
snp
updated 3.4 years ago by
GenoMax
150k • written 3.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
743
views
Create combined CpG and non-CpG bedgraphs for DNA methylation using Bismark
methylation
3.6 years ago by
pixie@bioinfo
★ 1.5k
2
votes
2
replies
939
views
R programming: basics to challenging
R
updated 3.8 years ago by
ATpoint
87k • written 3.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.5k
views
Plots for Correlation between two dataframes by row
R
updated 3.8 years ago by
Kevin Blighe
89k • written 3.8 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
823
views
Ideas to represent RNA-seq expression profile (Z-scores) and the significance level at the same time
R
RNAseq
updated 3.9 years ago by
German.M.Demidov
★ 3.0k • written 3.9 years ago by
pixie@bioinfo
★ 1.5k
2
votes
9
replies
24k
views
7 follow
HISAT error: Encountered internal HISAT2 exception (#1)
RNA-Seq
updated 4.0 years ago by
HaroonPakistan
• 0 • written 7.9 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.3k
views
Segmentation fault with HOMER
homer
HiC
updated 3.3 years ago by
Sai Prasada
• 0 • written 4.1 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
680
views
P value for test for proportions and random sampling
R
4.2 years ago by
pixie@bioinfo
★ 1.5k
4
votes
3
replies
1.6k
views
Self Organizing Maps for RNA-seq data
RNA-Seq
4.4 years ago by
pixie@bioinfo
★ 1.5k
2
votes
5
replies
2.1k
views
Using Deeptool for profile plots
deeptools
4.4 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
867
views
Issue with Diffreps
ChIP-Seq
4.4 years ago by
pixie@bioinfo
★ 1.5k
4
votes
2
replies
3.1k
views
Bismark: bedgraph to bigwig for DNA methylation
methylation
updated 4.4 years ago by
aconga
▴ 20 • written 4.6 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
715
views
Ideas Regarding TF regulatory network
network
4.5 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.9k
views
CUT&RUN analysis pipeline
alignment
sequencing
updated 4.5 years ago by
rpolicastro
13k • written 4.5 years ago by
pixie@bioinfo
★ 1.5k
1
vote
1
reply
929
views
Bedtools to make a bed file for promoter
bedtools
updated 4.5 years ago by
seidel
11k • written 4.5 years ago by
pixie@bioinfo
★ 1.5k
1
vote
1
reply
1.4k
views
DMR detection tools for whole genome bisulphite sequencing data in Plants
R
updated 4.6 years ago by
Gautier Richard
▴ 370 • written 4.6 years ago by
pixie@bioinfo
★ 1.5k
7
votes
6
replies
2.4k
views
Plant orthologous genes
gene
updated 4.7 years ago by
lieven.sterck
15k • written 4.7 years ago by
pixie@bioinfo
★ 1.5k
11
votes
4
replies
17k
views
Importing Network From Wgcna Into Cytoscape
cytoscape
network
updated 3.2 years ago by
pengmin.wang.1
▴ 30 • written 12.3 years ago by
pixie@bioinfo
★ 1.5k
1
vote
3
replies
1.4k
views
p value for permutation test for gene-interaction data
statistics
updated 4.8 years ago by
Nicolas Rosewick
11k • written 4.8 years ago by
pixie@bioinfo
★ 1.5k
3
votes
7
replies
4.8k
views
Statistical test for overlap
statistics
updated 4.8 years ago by
H.Hasani
▴ 990 • written 4.9 years ago by
pixie@bioinfo
★ 1.5k
3
votes
2
replies
2.1k
views
Boxplots from ChIP-seq Data
ChIP-Seq
updated 5.1 years ago by
Friederike
9.0k • written 5.1 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
1.0k
views
Heatmap using Interaction/HiCHip data
ngs
heatmap
5.2 years ago by
pixie@bioinfo
★ 1.5k
0
votes
1
reply
968
views
Finding over and under-represented interactions using HOMER
homer
hic
5.3 years ago by
pixie@bioinfo
★ 1.5k
21
votes
15
replies
4.7k
views
Functional Annotation Of Domains...
protein
updated 5.6 years ago by
Biostar
20 • written 14.6 years ago by
pixie@bioinfo
★ 1.5k
0
votes
2
replies
3.0k
views
KEGG pathway visualization AND Cytoscape
KEGG
updated 5.7 years ago by
sgoetz123
▴ 20 • written 5.7 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
755
views
Intersecting regions in the genome
genome
6.0 years ago by
pixie@bioinfo
★ 1.5k
0
votes
0
replies
1.9k
views
Ideas for integrating transcriptomic data/co-expression network and genome-scale metabolic networks
RNA-Seq
pathway
6.1 years ago by
pixie@bioinfo
★ 1.5k
3
votes
6
replies
1.5k
views
Calculating correlations using data from different experimental methods for a co-expression network
RNA-Seq
pcr
6.1 years ago by
pixie@bioinfo
★ 1.5k
1
vote
2
replies
1.5k
views
Sequence alignment viewer for a custom database
sequence-alignment
MSA
database
clustal
6.2 years ago by
pixie@bioinfo
★ 1.5k
2
votes
9
replies
6.1k
views
6 follow
Regarding getting gene count tables for DeSeq from StringTie using prepDE.py
RNA-Seq
stringtie
updated 6.3 years ago by
kashifahmad750
• 0 • written 7.7 years ago by
pixie@bioinfo
★ 1.5k
0
votes
5
replies
6.8k
views
Wgcna: Exporting Network To Cytoscape For Blockwise Module Construction
r
cytoscape
network
updated 6.3 years ago by
Biostar
20 • written 11.5 years ago by
pixie@bioinfo
★ 1.5k
2
votes
4
replies
1.3k
views
Suggestion regarding DESeq design of experiment
rna-seq
updated 6.5 years ago by
grant.hovhannisyan
★ 2.6k • written 6.5 years ago by
pixie@bioinfo
★ 1.5k
109 results • Page
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