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Showing :
questions
5
votes
7
replies
5.3k
views
Download all SRA of one species, organized
Biosample
edirect
NCBI
SRA
updated 2.1 years ago by
Ram
43k • written 9.4 years ago by
Lee Katz
★ 3.1k
4
votes
4
replies
3.6k
views
EC number regular expression
EC
regular-expression
enzyme-catalogue
perl
updated 2.4 years ago by
Ram
43k • written 9.7 years ago by
Lee Katz
★ 3.1k
2
votes
5
replies
4.6k
views
Recombination Breakpoint Detection
recombination
updated 4.4 years ago by
Biostar
20 • written 12.2 years ago by
Lee Katz
★ 3.1k
2
votes
1
reply
2.5k
views
Clonalframe To Dnd Conversion
phylogeny
updated 5.2 years ago by
Biostar
20 • written 11.8 years ago by
Lee Katz
★ 3.1k
1
vote
2
replies
2.3k
views
Command line blast atlas
command-line
batch
blast-atlas
updated 2.6 years ago by
Ram
43k • written 9.1 years ago by
Lee Katz
★ 3.1k
4
votes
2
replies
5.3k
views
What Happened To Mvirdb?
database
updated 6.1 years ago by
User 59
13k • written 12.6 years ago by
Lee Katz
★ 3.1k
1
vote
3
replies
3.6k
views
Fill in missing VCF information with bcftools or vcftools or Vcf.pm
vcftools
annotation
vcf
bcftools
Vcf.pm
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Lee Katz
★ 3.1k
3
votes
8
replies
5.9k
views
Challenge: Convert GenBank to Fasta without bioperl, without emboss, or any other dependencies
genbank
fasta
updated 20 months ago by
Ram
43k • written 8.5 years ago by
Lee Katz
★ 3.1k
5
votes
5
replies
7.2k
views
Rnammer Gives Mysterious Error
error
updated 9 months ago by
JackAttack
▴ 10 • written 12.8 years ago by
Lee Katz
★ 3.1k
7
votes
8
replies
3.1k
views
454 Gap Closures
assembly
updated 6.6 years ago by
Biostar
20 • written 13.4 years ago by
Lee Katz
★ 3.1k
4
votes
21
replies
3.4k
views
Portable genome browser
genome-browser
jbrowse
gbrowse
portable
updated 7.7 years ago by
cmdcolin
★ 3.8k • written 7.8 years ago by
Lee Katz
★ 3.1k
2
votes
7
replies
5.4k
views
Best Way To Assemble A Plasmid
miseq
illumina
assembly
updated 7.7 years ago by
Biostar
20 • written 11.2 years ago by
Lee Katz
★ 3.1k
0
votes
1
reply
2.0k
views
Pfge Prediction Based On Wgs
7.8 years ago by
Lee Katz
★ 3.1k
1
vote
1
reply
2.2k
views
Polytomies and tree comparison
phylogeny
polytomy
bioperl
ape
tree-comparison
updated 8.0 years ago by
jhc
★ 3.0k • written 8.1 years ago by
Lee Katz
★ 3.1k
2
votes
1
reply
2.3k
views
Msa Preserve Strandedness
multiple
format
bioperl
fasta
updated 8.2 years ago by
Biostar
20 • written 13.1 years ago by
Lee Katz
★ 3.1k
5
votes
5
replies
9.4k
views
Parallelized mpileup script
multithreaded
parallelized
xargs
mpileup
updated 16 months ago by
Ram
43k • written 9.1 years ago by
Lee Katz
★ 3.1k
3
votes
4
replies
4.1k
views
Add soft clipping to a bam file
bam
sam
picard
soft-clipping
samtools
updated 22 months ago by
Ram
43k • written 9.0 years ago by
Lee Katz
★ 3.1k
2
votes
7
replies
3.5k
views
Prokaryotic mobile element database
blast
IS-elements
database
mobile-elements
updated 24 months ago by
Ram
43k • written 9.2 years ago by
Lee Katz
★ 3.1k
53
votes
32
replies
13k
views
13 follow
Bio-Javascript?
updated 2.0 years ago by
Ram
43k • written 13.2 years ago by
Lee Katz
★ 3.1k
13
votes
12
replies
7.4k
views
Paired End Vs Single End Detection
illumina
paired-end
read
perl
updated 2.1 years ago by
Ram
43k • written 11.9 years ago by
Lee Katz
★ 3.1k
1
vote
11
replies
4.5k
views
Pileup viewer for VCF v4.2
bcftools-merge
vcf
vcf4.2
IGV
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Lee Katz
★ 3.1k
5
votes
9
replies
10k
views
bcftools merge; retaining sample names
bcftools
vcf
samtools
merge
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Lee Katz
★ 3.1k
22
votes
19
replies
20k
views
7 follow
In Silico Pcr Assay
pcr
bioperl
updated 2.8 years ago by
Peter
6.0k • written 12.8 years ago by
Lee Katz
★ 3.1k
1
vote
3
replies
2.4k
views
Outgroup from command line
raxml
perl
phylogeny
outgroup
command-line
updated 2.3 years ago by
Ram
43k • written 9.7 years ago by
Lee Katz
★ 3.1k
5
votes
7
replies
4.3k
views
Some Help Understanding With Mpileup Output
mpileup
samtools
updated 2.5 years ago by
Ram
43k • written 11.7 years ago by
Lee Katz
★ 3.1k
2
votes
2
replies
2.3k
views
Thought experiment and a challenge - an encoded message in amino acid sequence
theoretical
sequence
amino-acid
updated 2.6 years ago by
Ram
43k • written 10.0 years ago by
Lee Katz
★ 3.1k
2
votes
3
replies
3.5k
views
Velvet: Retain Read Names In Afg File
velvet
read
updated 10.1 years ago by
Biostar
20 • written 13.5 years ago by
Lee Katz
★ 3.1k
0
votes
3
replies
2.7k
views
Command Line Genome Browser
annotation
command-line
genome-browser
updated 10.1 years ago by
Istvan Albert
100k • written 10.1 years ago by
Lee Katz
★ 3.1k
1
vote
8
replies
3.0k
views
How To Go Fishing In A Metagenomics Sample Using Raw Reads As Bait
metagenomics
fastq
illumina
updated 10.3 years ago by
Pavel Senin
★ 1.9k • written 10.3 years ago by
Lee Katz
★ 3.1k
0
votes
3
replies
2.4k
views
Treeio And Bootstrap Values
bioperl
fst
10.3 years ago by
Lee Katz
★ 3.1k
9
votes
8
replies
5.3k
views
6 follow
Human Readable Multiple Sequence Alignment Format
multiple
format
updated 10.4 years ago by
Biostar
20 • written 13.2 years ago by
Lee Katz
★ 3.1k
21
votes
12
replies
8.2k
views
8 follow
Fedora Or Red Hat?
linux
updated 10.4 years ago by
jackuser1979
▴ 890 • written 13.3 years ago by
Lee Katz
★ 3.1k
6
votes
8
replies
5.8k
views
Fst Uneven Populations
updated 10.4 years ago by
Fabio Marroni
★ 3.0k • written 10.4 years ago by
Lee Katz
★ 3.1k
6
votes
8
replies
5.8k
views
6 follow
What Is A Good Phylogenetic Tree Viewer, Such That I Can View Internal Nodes?
phylogenetics
tree
visualization
clustering
updated 10.4 years ago by
Istvan Albert
100k • written 13.3 years ago by
Lee Katz
★ 3.1k
1
vote
0
replies
1.8k
views
Gpu-Blast Vs Smalt
blast
mapping
10.4 years ago by
Lee Katz
★ 3.1k
5
votes
4
replies
4.6k
views
Phylogenies: Adding Colors
phylogeny
bioperl
updated 10.5 years ago by
Josh Herr
5.8k • written 10.5 years ago by
Lee Katz
★ 3.1k
0
votes
0
replies
1.8k
views
Rast Genes All In The Forward Direction
annotation
updated 10.5 years ago by
Biostar
20 • written 12.0 years ago by
Lee Katz
★ 3.1k
2
votes
5
replies
3.1k
views
Imitate Pileup Format
samtools
mpileup
pileup
updated 10.7 years ago by
polarise
▴ 380 • written 10.7 years ago by
Lee Katz
★ 3.1k
3
votes
5
replies
2.3k
views
Can Mlst (Multi Locus Sequence Typing) Profiles Be Built From Raw Reads
mapping
illumina
10.7 years ago by
Lee Katz
★ 3.1k
2
votes
2
replies
1.6k
views
Distance Between Read Sets
distance
updated 10.7 years ago by
Eric Normandeau
11k • written 10.7 years ago by
Lee Katz
★ 3.1k
3
votes
3
replies
2.0k
views
Conferences On Genomics?
conference
genomics
evolution
updated 10.8 years ago by
Charles Warden
8.2k • written 10.8 years ago by
Lee Katz
★ 3.1k
0
votes
3
replies
2.1k
views
Subcellular Localization
10.8 years ago by
Lee Katz
★ 3.1k
8
votes
7
replies
2.5k
views
Scaffolding: Is This Legit?
scaffolding
assembly
updated 11.1 years ago by
Michael
54k • written 11.1 years ago by
Lee Katz
★ 3.1k
1
vote
1
reply
2.0k
views
Clustering Genes, Getting The Full Identifier
11.1 years ago by
Lee Katz
★ 3.1k
9
votes
9
replies
6.8k
views
Illumina Assembly Gap Closure
assembly
illumina
updated 11.2 years ago by
SES
8.6k • written 11.2 years ago by
Lee Katz
★ 3.1k
0
votes
2
replies
2.6k
views
Adding Domains To Cds In Genbank Format
genbank
cds
11.3 years ago by
Lee Katz
★ 3.1k
8
votes
6
replies
6.8k
views
Sra Toolkit For Pacbio
sra
extraction
updated 11.4 years ago by
osullivanchristopher
▴ 210 • written 11.4 years ago by
Lee Katz
★ 3.1k
4
votes
3
replies
3.0k
views
Storage For Miseq In-House
server
updated 11.4 years ago by
Josh Herr
5.8k • written 11.4 years ago by
Lee Katz
★ 3.1k
33
votes
15
replies
4.5k
views
9 follow
What Do You Use For Publication Alerts?
updated 11.5 years ago by
Cliff Beall
▴ 470 • written 11.5 years ago by
Lee Katz
★ 3.1k
7
votes
3
replies
4.1k
views
Ways To Detect Bias In Dna Sampling For Genomic Sequencing
genome
sequencing
updated 11.5 years ago by
Zev.Kronenberg
12k • written 11.5 years ago by
Lee Katz
★ 3.1k
75 results • Page
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