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0
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0
replies
529
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RRBS fastq - biased per base sequence content
fastqc rrbs
2.1 years ago by mbk0asis ▴ 700
1
vote
2
replies
1.8k
views
WGCNA - consensus analysis - cutreeStatic - no samples selected
RNA-Seq WGCNA
updated 2.9 years ago by • 0 • written 4.9 years ago by ▴ 700
0
votes
1
reply
2.5k
views
WGCNA blockwiseConsensusModules : number of colors and objects in dendrogram don't match
wgcna blockwiseConsensusModules
updated 3.1 years ago by • 0 • written 5.6 years ago by ▴ 700
0
votes
1
reply
1.2k
views
Seurat - LoadLoom Error: missing values are not allowed in subscripted assignments of data frames
loom Seurat
updated 23 months ago by • 0 • written 3.6 years ago by ▴ 700
4
votes
2
replies
1.2k
views
DESeq2: impact of number of expressed genes in differential expression analysis
genes number of DESeq2 expressed
4.0 years ago by mbk0asis ▴ 700
6
votes
6
replies
1.5k
views
Divide by a specified member in a group in R
R dplyr
updated 4.0 years ago by ★ 2.9k • written 4.0 years ago by ▴ 700
0
votes
2
replies
3.0k
views
FindIntegrationAnchors returs 0 anchor after filtering
seurat dataintegration FindIntegrationAnchors
4.2 years ago by mbk0asis ▴ 700
0
votes
3
replies
1.2k
views
how to create mutant DNA sequence
mutation in silico mutagenesis
4.5 years ago by mbk0asis ▴ 700
4
votes
2
replies
1.2k
views
GSVA example leukemia returns a 'NULL' object
gsva RNA-Seq
updated 4.9 years ago by 89k • written 4.9 years ago by ▴ 700
0
votes
2
replies
2.3k
views
Seurat3 DimPlot inconsistency
RNA-Seq Seurat Seurat3
5.0 years ago by mbk0asis ▴ 700
3
votes
8
replies
2.1k
views
Odd DESeq2 results
RNA-Seq DESeq2
5.0 years ago by mbk0asis ▴ 700
7
votes
3
replies
1.7k
views
biomaRt::getSequence - Invalid type argument
biomaRt R
updated 14 months ago by 45k • written 5.0 years ago by ▴ 700
5
votes
5
replies
3.3k
views
<DESeqDataSet>[i,] index out of bounds - subsetting DESeqDataSet
DESeq
5.0 years ago by mbk0asis ▴ 700
3
votes
4
replies
3.2k
views
deepTools : No module named cycler
deepTools python cycler
5.1 years ago by mbk0asis ▴ 700
1
vote
7
replies
6.1k
views
plotProfile (deepTools) generated a peak on gene body region
deepTools plotProfile
updated 5.1 years ago by ▴ 50 • written 7.5 years ago by ▴ 700
3
votes
3
replies
4.7k
views
mapIDs (AnnotationDBi) returns shorter list of IDs than input IDs
AnnotationDBi mapIDs R AnnotationDBI
5.3 years ago by mbk0asis ▴ 700
5
votes
4
replies
1.9k
views
Normalizing NGS samples expected to have different total reads
NGS Normalization
5.4 years ago by mbk0asis ▴ 700
11
votes
3
replies
4.5k
views
fGSEA result to csv
fGSEA RNA-Seq GSEA
updated 5.6 years ago by ▴ 1000 • written 5.6 years ago by ▴ 700
1
vote
2
replies
2.1k
views
View gene list in GAGE enriched terms
gage gsea gene ontology
updated 6.1 years ago by • 0 • written 7.1 years ago by ▴ 700
1
vote
3
replies
2.7k
views
How can I access the consensus sequences of all human ERVs from Dfam?
dfam erv
updated 6.3 years ago by ▴ 240 • written 7.3 years ago by ▴ 700
2
votes
4
replies
1.5k
views
1000 genome project - difference between "0" and "0|0"
1000 genome project genotype vcf
updated 6.8 years ago by 5.8k • written 6.8 years ago by ▴ 700
0
votes
0
replies
1.3k
views
Meaning of mfold upper limit?
mfold macs2 ChIP-Seq
6.9 years ago by mbk0asis ▴ 700
1
vote
1
reply
2.1k
views
how to interpret imputed/phased VCF?
vcf imputed phased
6.9 years ago by mbk0asis ▴ 700
3
votes
2
replies
3.3k
views
deepTools - change line colors in profile plots above a heatmap
deeptools profile plot heatmap
updated 7.0 years ago by 105k • written 7.0 years ago by ▴ 700
0
votes
1
reply
1.2k
views
Can I combine sessions saved in UCSC genome browser?
UCSC genome browser sessions
7.0 years ago by mbk0asis ▴ 700
0
votes
3
replies
2.2k
views
Repeat names with "dup" at the end in repeatMasker GTF (UCSC) file?
repeatMasker UCSC
updated 7.2 years ago by ▴ 580 • written 7.3 years ago by ▴ 700
0
votes
0
replies
834
views
CpG distribution in reads with variable length
pattern count variable length
7.3 years ago by mbk0asis ▴ 700
0
votes
0
replies
1.2k
views
Repetitive region expression in TCGA RNA-seq data?
TCGA repetitive regions
7.5 years ago by mbk0asis ▴ 700
0
votes
0
replies
1.5k
views
Can we estimate actual copy number using Segment_means in TCGA level 3 CNV data?
TCGA CNV copy number
7.5 years ago by mbk0asis ▴ 700
2
votes
3
replies
4.1k
views
How to calculate polygenic hazard score (PHS)?
plygenic hazard score Alzheimer statistics
updated 7.5 years ago by • 0 • written 8.2 years ago by ▴ 700
0
votes
1
reply
1.2k
views
Extraction of every n-th and m-th columns
bash command
updated 7.7 years ago by 36k • written 7.7 years ago by ▴ 700
22
votes
16
replies
17k
views
9 follow
fasta - reverse complement sequence
fasta reverse complement bash
updated 7.7 years ago by • 0 • written 9.2 years ago by ▴ 700
7
votes
2
replies
2.5k
views
save plots in for loop
R for loop jpeg grep
8.0 years ago by mbk0asis ▴ 700
0
votes
3
replies
4.0k
views
coxph error : missing value where TRUE/FALSE needed
survival analysis coxph
updated 8.1 years ago by 5.8k • written 8.1 years ago by ▴ 700
0
votes
0
replies
1.3k
views
How to predict onset age using polygenic hazard score?
polygenic hazard score Alzheimer
8.1 years ago by mbk0asis ▴ 700
0
votes
0
replies
2.6k
views
TCGAbiolinks - GDCdownload error
TCGAbiolinks R
updated 2.3 years ago by 45k • written 8.2 years ago by ▴ 700
11
votes
7
replies
5.6k
views
deepTools cluster information?
deepTools kmeans clustering
updated 8.4 years ago by 105k • written 8.4 years ago by ▴ 700
0
votes
3
replies
2.0k
views
intersectBed - multiple intersections
bedtools intersectBed
updated 8.5 years ago by ▴ 180 • written 8.5 years ago by ▴ 700
10
votes
5
replies
2.1k
views
Inserting delim between numbers and strings in bash
bash
updated 8.5 years ago by ▴ 40 • written 8.5 years ago by ▴ 700
2
votes
1
reply
2.1k
views
Allele specific expression (ASE) using unfiltered reads from RNA-seq data?
RNA-Seq allele-specific-expression ASE
updated 8.6 years ago by 20 • written 8.9 years ago by ▴ 700
1
vote
2
replies
2.5k
views
Normalization necessary for TCGA 450K data?
450K normalization
updated 8.8 years ago by 13k • written 8.8 years ago by ▴ 700
4
votes
9
replies
2.9k
views
How to split numbers and strings?
split
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 700
5
votes
4
replies
3.6k
views
GAGE - eg2sym (ID conversion)
GAGE RNA-Seq GSEA KEGG
updated 8.8 years ago by ★ 2.6k • written 8.9 years ago by ▴ 700
4
votes
2
replies
2.2k
views
Where can I get bovine 'kegg.gs' in R?
kegg.gs bovine RNA-Seq
updated 9.1 years ago by 7.6k • written 9.1 years ago by ▴ 700
5
votes
5
replies
4.1k
views
awk : if length to a pattern at column 2 is less than 5
awk regex
updated 9.1 years ago by 14k • written 9.2 years ago by ▴ 700
4
votes
4
replies
2.5k
views
new line to tab in every second column
linux bash
updated 9.2 years ago by 11k • written 9.2 years ago by ▴ 700
23
votes
2
replies
11k
views
1/2 in VCF genotype field?
vcf zygosity
updated 9.2 years ago by 14k • written 9.2 years ago by ▴ 700
8
votes
5
replies
8.2k
views
how to substitue Nth character in a string using linux commands
linux commands
updated 9.2 years ago by ★ 4.0k • written 9.2 years ago by ▴ 700
3
votes
6
replies
13k
views
overlapping texts (plot.PCA in FactoMineR)
R factominer
9.3 years ago by mbk0asis ▴ 700
3
votes
3
replies
3.3k
views
How to find out the mismatch position from MUSCLE or CLUSTALW output?
muscle mismatch-finding
updated 2.9 years ago by 45k • written 9.5 years ago by ▴ 700
63 results • Page 1 of 2
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