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0
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164
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DADA2 truncLen value
metabarcoding phyloseq DADA2 illumina
6 weeks ago by Bioinfo ▴ 20
0
votes
0
replies
321
views
Correct 18S data file to assign taxonomy
dada2 R
updated 10 months ago by 43k • written 10 months ago by ▴ 20
0
votes
3
replies
828
views
filterAndTrim : Error in add(bin) : record does not start with '@'
R filterAndTrim DADA2
updated 14 months ago by 142k • written 14 months ago by ▴ 20
0
votes
3
replies
698
views
Statistical methods to determine descrimimant variables between two groups
multivariate R statistics Univariate
updated 24 months ago by 27k • written 24 months ago by ▴ 20
0
votes
1
reply
619
views
Compare elements of a vector and choose elements from vector to be eliminated in a data set
dataframe vectors R statistics
updated 2.5 years ago by ▴ 820 • written 2.5 years ago by ▴ 20
0
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2
replies
806
views
Creating column that groups data from another columns
R statistics function data
2.6 years ago by Bioinfo ▴ 20
0
votes
6
replies
1.2k
views
Error : the argument is neither numerical nor logical: return of NA
R Statistics Mean
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 20
0
votes
0
replies
469
views
Monophyly analysis with Mega n which parametres i should use
gene genome software error alignment
3.5 years ago by Bioinfo ▴ 20
2
votes
5
replies
1.4k
views
Count number of Genes in GFF3 file (Prokka output)
assembly sequence gene sequencing
updated 3.6 years ago by 8.6k • written 3.6 years ago by ▴ 20
0
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0
replies
605
views
Core genome analysis for viruses
assembly sequence sequencing gene
3.6 years ago by Bioinfo ▴ 20
2
votes
5
replies
782
views
what is the parametrs i should take in consideration to choose the best assembly
assembly Assembly sequencing sequence alignment
updated 4.0 years ago by 54k • written 4.0 years ago by ▴ 20
2
votes
11
replies
2.2k
views
Align reads files with diffrent number of reads using bowtie2
sequence alignment
updated 4.0 years ago by 20 • written 4.2 years ago by ▴ 20
0
votes
1
reply
537
views
How to determine the number of number of nucleotides
sequencing sequence alignment assembly
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 20
0
votes
1
reply
587
views
How to download specefic gene of all speices strains
assembly genome gene next-gen
4.0 years ago by Bioinfo ▴ 20
1
vote
2
replies
639
views
Merging three assembly results and elimination of duplication
alignment sequencing assembly Assembly
updated 4.0 years ago by ▴ 160 • written 4.0 years ago by ▴ 20
1
vote
9
replies
2.6k
views
how to determine the percentage of the coverage
sequencing alignment assembly
4.0 years ago by Bioinfo ▴ 20
2
votes
5
replies
899
views
Counting speceficspecific lines that dosen't conaint speceficdon't contain specific word
Assembly alignment sequencing
updated 4.0 years ago by 35k • written 4.0 years ago by ▴ 20
1
vote
5
replies
1.7k
views
cd-hit redondancy Fatal Error: in diag_test_aapn, MAX_DIAG reached Program halted !!
software error Assembly alignment
4.0 years ago by Bioinfo ▴ 20
1
vote
4
replies
840
views
How can eliminate the duplication in fasta file
Assembly alignment sequencing assembly
updated 4.0 years ago by 142k • written 4.0 years ago by ▴ 20
1
vote
5
replies
838
views
how can i determine the couverture (coverage ) of my reads on the whole genome using mapping (bowtie2)
Assembly alignment sequence
updated 4.0 years ago by 100k • written 4.0 years ago by ▴ 20
0
votes
1
reply
809
views
SSPACE fasta output doesn't contain undefined nucleotides (NNNNNNN nucleotides )
assembly sequence software error alignment
4.0 years ago by Bioinfo ▴ 20
0
votes
3
replies
1.6k
views
Bowtie-Build error ,Warning: Empty input file Reference file does not seem to be a FASTA file
alignment assembly sequencing software error
4.0 years ago by Bioinfo ▴ 20
0
votes
4
replies
788
views
Problem using Bowtie : Warning: Empty input file Reference file does not seem to be a FASTA file
assembly sequencing software error alignment
4.0 years ago by Bioinfo ▴ 20
0
votes
0
replies
714
views
SSPACE Bowtie error : can't open bwa output -- fatal
assembly alignment sequence software error
4.1 years ago by Bioinfo ▴ 20
1
vote
4
replies
2.2k
views
Qualimap Failed to run bamqc
Assembly alignment software error R
4.1 years ago by Bioinfo ▴ 20
0
votes
0
replies
435
views
tools to determine SSPACE average size in library
assembly sequencing alignment
4.1 years ago by Bioinfo ▴ 20
0
votes
2
replies
819
views
what is the input i should give to GapCloser ?
Assembly software error sequence assembly
4.1 years ago by Bioinfo ▴ 20
0
votes
3
replies
1.3k
views
Anyone kno what is what is config_file in gapFiller ?
assembly alignment sequence software error
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 20
0
votes
0
replies
553
views
How to build library in SSPACE
assembly sequencing alignment
4.1 years ago by Bioinfo ▴ 20
0
votes
0
replies
857
views
(Scaffolding ) Gap Closer - Gap Filler , SSPACE
Assembly alignment sequence sequencing
4.1 years ago by Bioinfo ▴ 20
0
votes
7
replies
1.2k
views
Number of contigs is too big
assembly alignment sequencing sequence
4.1 years ago by Bioinfo ▴ 20
1
vote
4
replies
1.3k
views
The best k mer to use for illumina data
assembly sequence genome alignment next-gen
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 20
0
votes
7
replies
1.3k
views
best k-mer(s) to use for Mi seq and Hi seq data
sequence assembly alignment sequencing
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 20
7
votes
4
replies
770
views
How to separate Miseq data and Hiseq data
Assembly alignment sequence genome
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 20
0
votes
3
replies
967
views
assembly of fastq_pair results (4 files )
Assembly alignment software error sequence
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 20
1
vote
5
replies
1.5k
views
How to obtain my forward and reverse reads from sam / bam file
assembly Assembly sequence software error
4.1 years ago by Bioinfo ▴ 20
2
votes
6
replies
2.3k
views
how to split forward and reverse reads from sam file
assembly alignment sequencing
updated 4.1 years ago by 142k • written 4.1 years ago by ▴ 20
0
votes
2
replies
1.4k
views
Fastqc shows error message
Assembly sequencing genome next-gen
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 20
1
vote
11
replies
8.9k
views
How to split fastq file containing Forward and Reverse reads to two files Forward and Reverse
sequencing genome alignment Assembly
updated 23 months ago by • 0 • written 4.2 years ago by ▴ 20
0
votes
2
replies
900
views
How can i extract unmapped reads using blast
assembly genome sequencing
updated 4.2 years ago by 142k • written 4.2 years ago by ▴ 20
0
votes
3
replies
803
views
Removing reads from data using Blast
sequencing assembly
updated 4.2 years ago by 142k • written 4.2 years ago by ▴ 20
1
vote
5
replies
808
views
I want to assembly all the reads at ones in linux
assembly sequence genome
updated 4.2 years ago by ▴ 30 • written 4.2 years ago by ▴ 20
9
votes
6
replies
4.5k
views
6 follow
Remove contigs that are lower than 200
assembly sequencing genome next-gen
updated 8 weeks ago by 142k • written 4.2 years ago by ▴ 20
3
votes
6
replies
1.3k
views
Busco Folder: prfl
gene genome sequencing
updated 10 months ago by 43k • written 4.2 years ago by ▴ 20
0
votes
3
replies
1.2k
views
MUMmer . Global alignment
alignment MUMmer sequencing
updated 4.3 years ago by 20 • written 4.5 years ago by ▴ 20
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