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5
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4
replies
7.1k
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How to obtain distinct/uniqe rows from GenomicRanges object
R GenomicRanges bioconductor
updated 22 months ago by 45k • written 6.4 years ago by ▴ 380
0
votes
1
reply
1.1k
views
Comment: Comment: How reliable is Alphafold2 for folding random-coil peptide
3.6 years ago by gundalav ▴ 380
3
votes
3
replies
1.1k
views
How reliable is Alphafold2 for folding random-coil peptide
alphafold2 peptide protein
updated 3.6 years ago by ★ 30k • written 3.6 years ago by ▴ 380
0
votes
0
replies
1.2k
views
Comment: Comment: How to recover gene expression used for scran::pairwiseTTests()
3.7 years ago by gundalav ▴ 380
3
votes
2
replies
1.2k
views
How to recover gene expression used for scran::pairwiseTTests()
scran singlecell rnaseq
3.7 years ago by gundalav ▴ 380
0
votes
0
replies
1.2k
views
How to interpret scRNA-Seq cell dynamics from scVelo and CytoTrace results
velocyto cell cytotrace rnaseq dynamics
4.3 years ago by gundalav ▴ 380
0
votes
0
replies
764
views
How to show that one docking is better than another with Pymol visually
docking structure pymol pdb
4.3 years ago by gundalav ▴ 380
0
votes
0
replies
1.2k
views
Comment: Comment: Which error bar to use to show gene expression from single-cell RNAseq data
4.3 years ago by gundalav ▴ 380
0
votes
1
reply
1.2k
views
Which error bar to use to show gene expression from single-cell RNAseq data
expression rnaseq statistics gene single-cell
4.3 years ago by gundalav ▴ 380
2
votes
1
reply
2.4k
views
Appropriate statistical test for comparing two samples in single-cell RNAseq
monocle3 expression differential single-cell rna-seq
updated 4.4 years ago by 90k • written 4.4 years ago by ▴ 380
0
votes
0
replies
764
views
How to calculate RMSD and binding energy from the already docked ligand-receptor
python protein docking pdb structure
4.4 years ago by gundalav ▴ 380
4
votes
1
reply
2.9k
views
How to tell if enrichment is good or bad from GSEA plot
genes gsea enrichment
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 380
0
votes
0
replies
1.1k
views
Programmatically adding hydrogen and remove water to multiple PDB files
docking pdb python structure
4.4 years ago by gundalav ▴ 380
0
votes
1
reply
2.2k
views
Comment: Comment: On whether or not to normalize scRNAseq expression like qPCR
4.4 years ago by gundalav ▴ 380
0
votes
1
reply
3.3k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by gundalav ▴ 380
0
votes
2
replies
3.3k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by gundalav ▴ 380
7
votes
5
replies
2.2k
views
On whether or not to normalize scRNAseq expression like qPCR
single-cell qpcr rnaseq
updated 4.4 years ago by 22k • written 4.4 years ago by ▴ 380
1
vote
1
reply
3.3k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by gundalav ▴ 380
0
votes
3
replies
3.3k
views
Comment: Comment: How to determine reasonable expression threshold for of a gene from scRNAseq to
4.4 years ago by gundalav ▴ 380
13
votes
12
replies
3.3k
views
How to determine reasonable expression threshold for of a gene from scRNAseq to imply its biological significance
statistics single-cell rnaseq
4.4 years ago by gundalav ▴ 380
1
vote
1
reply
2.1k
views
How to tell if our ligand-protein docking is good from AutoDock Vina's result
protein-structure vina autodock docking pdb
updated 4.4 years ago by ★ 30k • written 4.4 years ago by ▴ 380
1
vote
2
replies
2.2k
views
How to extract subset of protein structure (PDB format) file based on a subsequence of protein
protein pdb python r
updated 4.4 years ago by ▴ 390 • written 4.4 years ago by ▴ 380
0
votes
0
replies
1.6k
views
Filtering criteria for selecting DEGs from Monocle3 regression analysis with categorical terms
RNA-Seq monocle differential-expression
5.9 years ago by gundalav ▴ 380
1
vote
1
reply
1.4k
views
How to remove the squished track in Give AlignmentTrack()
RNA-Seq
updated 6.5 years ago by ▴ 30 • written 7.4 years ago by ▴ 380
6
votes
6
replies
9.5k
views
How to add RG tag into the optional field in a BAM file
sequencing single-cell bam samtools
updated 7.4 years ago by 16k • written 7.5 years ago by ▴ 380
0
votes
1
reply
9.5k
views
Comment: C: How to add RG tags in a single cell BAM file where each group indicate barcode
7.5 years ago by gundalav ▴ 380
16
votes
10
replies
22k
views
7 follow
Creating Barplot With Horizontal Marker And Asterisks For Biological Paper
plot r
updated 7.8 years ago by ▴ 10 • written 12.0 years ago by ▴ 380
3
votes
1
reply
4.4k
views
How to show all columns after performing GenomicRanges::subsetByOverlaps
R bioconductor genomicrange gwas
updated 7.9 years ago by 27k • written 7.9 years ago by ▴ 380
5
votes
2
replies
4.2k
views
Can or should we perform feature counting with `bedtools intersect -c`?
bedtools rna-seq featureCounts
8.2 years ago by gundalav ▴ 380
0
votes
0
replies
4.2k
views
Comment: C: Can or should we perform feature counting with `bedtools intersect -c`?
8.2 years ago by gundalav ▴ 380
0
votes
1
reply
6.1k
views
Comment: C: How to recover treated/control count from DESeq2 output
8.5 years ago by gundalav ▴ 380
11
votes
4
replies
6.1k
views
How to recover treated/control count from DESeq2 output
RNA-Seq DSeq2
updated 8.6 years ago by 8.4k • written 8.6 years ago by ▴ 380
4
votes
17
replies
13k
views
How to calculate RPKM from featureCounts output
RNA-Seq
updated 8.7 years ago by ★ 3.5k • written 8.7 years ago by ▴ 380
0
votes
1
reply
13k
views
Comment: C: How to calculate RPKM from featureCounts output
8.7 years ago by gundalav ▴ 380
0
votes
1
reply
13k
views
Comment: C: How to calculate RPKM from featureCounts output
8.7 years ago by gundalav ▴ 380
0
votes
1
reply
13k
views
Comment: C: How to calculate RPKM from featureCounts output
8.7 years ago by gundalav ▴ 380
2
votes
5
replies
2.4k
views
Problem Converting BAM to SAM on to Amazon-S3 Using Samtools
samtools amazon-web-services amazon-ec2 amazon-s3
updated 8.7 years ago by 105k • written 8.7 years ago by ▴ 380
0
votes
1
reply
6.9k
views
Comment: C: TrimGalore parameter form Nextera paired-end reads adapter removal
8.7 years ago by gundalav ▴ 380
4
votes
4
replies
6.9k
views
TrimGalore parameter form Nextera paired-end reads adapter removal
adapter sequencing illumina trimming nextera
updated 8.7 years ago by 105k • written 8.7 years ago by ▴ 380
0
votes
0
replies
5.5k
views
Comment: C: Why mapping rate is low after adapter trimming paired-end data?
8.7 years ago by gundalav ▴ 380
3
votes
6
replies
5.5k
views
Why mapping rate is low after adapter trimming paired-end data?
sequencing alignment adapter cutadapt trim_galore
updated 8.7 years ago by 15k • written 8.7 years ago by ▴ 380
0
votes
0
replies
5.5k
views
Comment: C: Why mapping rate is low after adapter trimming paired-end data?
8.7 years ago by gundalav ▴ 380
4
votes
6
replies
3.0k
views
How Useful Is Non-Mapping Based Reads Classification?
next-gen classification alignment mapping cancer
updated 8.9 years ago by 20 • written 13.0 years ago by ▴ 380
0
votes
1
reply
2.1k
views
Mirna Disease Annotated Corpus
annotation
updated 2.7 years ago by 45k • written 12.3 years ago by ▴ 380
2
votes
4
replies
3.4k
views
How to obtain insert sequence from paired-end mapping result (SAM/BAM)
RNA-Seq bowtie2 alignment samtools
updated 9.2 years ago by ★ 3.0k • written 9.2 years ago by ▴ 380
0
votes
1
reply
3.4k
views
Comment: C: How to obtain insert sequence from paired-end mapping result (SAM/BAM)
9.2 years ago by gundalav ▴ 380
1
vote
1
reply
2.1k
views
Method to detect gene co-expression of genomic feature in cell lineage
microarray clustering RNA-Seq
updated 2.9 years ago by 45k • written 10.4 years ago by ▴ 380
0
votes
1
reply
2.4k
views
Your Favorite Mirna-Gene Concordance Database Resource
gene-annotation mirna
updated 2.7 years ago by 45k • written 12.8 years ago by ▴ 380
1
vote
1
reply
2.5k
views
Non-Immune cell type gene expression database
database
updated 11.5 years ago by 11k • written 11.5 years ago by ▴ 380
19
votes
9
replies
6.9k
views
6 follow
Best Practice For Extracting Gene Names From Pubmed Abstracts
pubmed
updated 11.7 years ago by 166k • written 12.8 years ago by ▴ 380
71 results • Page 1 of 2
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