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homer findMotifsGenome.pl
chip-seq atac-seq homer
updated 3 months ago by ★ 1.7k • written 3 months ago by ▴ 50
0
votes
0
replies
212
views
deeptools k-means clustering
heatmap deeptools chipseq
5 months ago by biology_inform ▴ 50
0
votes
0
replies
278
views
Creating heatmap for ChIP-seq using deeptools
heatmap chipseq chip deeptools visualization
5 months ago by biology_inform ▴ 50
0
votes
6
replies
594
views
gene correlations in between two groups
gene-expression correlation
7 months ago by biology_inform ▴ 50
0
votes
7
replies
3.5k
views
7 follow
RNA-Seq analysis with Python
python RNA-Seq data-analysis
updated 9 months ago by ▴ 90 • written 3.4 years ago by ▴ 50
2
votes
5
replies
20k
views
FastQC command line usage
command-line FastQC linux CentOS
updated 10 months ago by ▴ 90 • written 2.2 years ago by ▴ 50
0
votes
4
replies
955
views
clustering changes in complex heatmap everytime
rnaseq heatmap complex
10 months ago by biology_inform ▴ 50
2
votes
5
replies
785
views
complex heatmap
rna-seq complexheatmap
updated 10 months ago by ★ 3.9k • written 10 months ago by ▴ 50
1
vote
3
replies
838
views
complex heatmap with CPM
edgeR rna-seq dge heatmap deseq2
updated 10 months ago by 82k • written 10 months ago by ▴ 50
1
vote
3
replies
870
views
rna seq design matrix
edgeR deseq2 modelmatrix dge rna-seq
updated 11 months ago by 82k • written 11 months ago by ▴ 50
0
votes
1
reply
649
views
GSEA with duplicate sample
rna-seq GSEA
updated 11 months ago by ★ 1.8k • written 11 months ago by ▴ 50
0
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6
replies
1.2k
views
ceres score in crispr screen
ceres crispr ngs
updated 14 months ago by 43k • written 14 months ago by ▴ 50
1
vote
1
reply
537
views
GSEA phenotype label file and expression data relation
GSEA
updated 18 months ago by 6.2k • written 18 months ago by ▴ 50
0
votes
1
reply
514
views
Microarray platform download in R
R transcriptome microarray
updated 21 months ago by 4.5k • written 21 months ago by ▴ 50
1
vote
3
replies
853
views
Microarray analysis error
R transcriptome microarray
updated 21 months ago by 43k • written 21 months ago by ▴ 50
1
vote
2
replies
520
views
gsea msigdb RNA-seq input file
gsea rna-seq msigdb
22 months ago by biology_inform ▴ 50
2
votes
4
replies
2.1k
views
enhanced volcano label point
rnaseq enhancedvolcano
updated 22 months ago by 21k • written 22 months ago by ▴ 50
0
votes
1
reply
500
views
gene library composition
composition rna-seq
updated 22 months ago by ★ 1.2k • written 22 months ago by ▴ 50
0
votes
0
replies
304
views
Gene classification
gene classification
22 months ago by biology_inform ▴ 50
1
vote
1
reply
481
views
volcano plot display selected labels
volcanoplot enhancedvolcano rna-seq
updated 22 months ago by 87k • written 22 months ago by ▴ 50
0
votes
1
reply
523
views
understanding similarity in different sra files
profile expression rna-seq
updated 22 months ago by 14k • written 22 months ago by ▴ 50
0
votes
1
reply
820
views
WGCNA outliers
wgcna rnaseq
updated 23 months ago by 82k • written 23 months ago by ▴ 50
0
votes
1
reply
596
views
wgcna without clinical traits
wgcna rnaseq
updated 23 months ago by 19k • written 23 months ago by ▴ 50
1
vote
6
replies
990
views
Comparative transcriptomics
rna-seq comparative transcriptomics
updated 11 months ago by 4.2k • written 23 months ago by ▴ 50
0
votes
0
replies
300
views
similarity of transcriptome
transcriptome rna-seq
23 months ago by biology_inform ▴ 50
5
votes
2
replies
1.1k
views
enrichr
enrichr
updated 23 months ago by ▴ 450 • written 2.3 years ago by ▴ 50
0
votes
2
replies
1.9k
views
ggplot and DESeq2 PCA plot
ggplot pca rna-seq deseq2
updated 23 months ago by ★ 1.7k • written 23 months ago by ▴ 50
1
vote
4
replies
764
views
finding coverage of bam file
bam rna-seq igv
updated 24 months ago by 8.7k • written 24 months ago by ▴ 50
0
votes
2
replies
479
views
igv and bam file
igv rna-seq bam
updated 22 months ago by 43k • written 24 months ago by ▴ 50
0
votes
2
replies
721
views
clusterprofiler gsea analysis
clusterprofiler gsea organism
updated 24 months ago by 21k • written 24 months ago by ▴ 50
1
vote
4
replies
848
views
trimming a paired end sra
adapter fastqc rna-seq
updated 24 months ago by 141k • written 24 months ago by ▴ 50
1
vote
1
reply
494
views
trimming adapter sequences
adapter fastqc rnaseq
updated 24 months ago by 100k • written 24 months ago by ▴ 50
1
vote
2
replies
603
views
defuse installation
installation defuse
updated 24 months ago by ★ 1.8k • written 24 months ago by ▴ 50
1
vote
1
reply
537
views
igv and vcf difference
rnaseq bam mutation vcf igv
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 50
0
votes
1
reply
455
views
mutation profile from rna-seq data
ngs profile rna-seq mutation
updated 2.0 years ago by 4.5k • written 2.0 years ago by ▴ 50
1
vote
1
reply
730
views
featurecounts index bai file
featurecounts rna-seq
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 50
2
votes
3
replies
1.1k
views
Featurecounts
featurecounts bam RNA-seq
updated 13 months ago by 43k • written 2.0 years ago by ▴ 50
1
vote
4
replies
830
views
RNA-seq analysis without replicate
edgeR rna-seq dge
updated 2.0 years ago by ★ 7.0k • written 2.0 years ago by ▴ 50
1
vote
3
replies
719
views
edgeR
edgeR rna-seq dge
updated 2.0 years ago by ★ 7.0k • written 2.0 years ago by ▴ 50
1
vote
2
replies
723
views
Multiple file genome alignment with STAR
alignment rna-seq star
updated 2.0 years ago by ★ 2.1k • written 2.0 years ago by ▴ 50
1
vote
1
reply
642
views
deseq2 problem
deseq2 rna-seq
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 50
0
votes
1
reply
557
views
edgeR comparison of 2 samples
edgeR rna-seq
updated 2.0 years ago by 8.7k • written 2.0 years ago by ▴ 50
2
votes
2
replies
599
views
filtering dge data with cpm
expression r gene rna-seq differential
updated 2.0 years ago by ★ 2.5k • written 2.1 years ago by ▴ 50
0
votes
0
replies
321
views
rtracklayer and combining gff with count matrix
rna-seq rtracklayer r count
2.1 years ago by biology_inform ▴ 50
8
votes
9
replies
2.2k
views
htseq-count error
htseq rnaseq rna-seq
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 50
5
votes
11
replies
3.6k
views
6 follow
Salmon alignment based quantification
Salmon rna-seq quantification
updated 5 months ago by • 0 • written 2.1 years ago by ▴ 50
4
votes
3
replies
1.3k
views
biomart and rtracklayer
biomart rtracklayer installation r
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 50
1
vote
2
replies
1.1k
views
Salmon installation problem
salmon rnaseq installation rna-seq
2.1 years ago by biology_inform ▴ 50
3
votes
5
replies
2.0k
views
star alignment
bam RNA-seq star
updated 13 months ago by 43k • written 2.1 years ago by ▴ 50
1
vote
3
replies
713
views
igv viewer
viewer core dependency requirements igv
updated 2.1 years ago by 161k • written 2.1 years ago by ▴ 50
55 results • Page 1 of 2
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