Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
10
votes
11
replies
3.9k
views
6 follow
Read bam/cram file with IGV from aws s3
s3
IGV
aws
amazon
22 months ago by
quentin54520
▴ 120
0
votes
1
reply
414
views
Tools for rare variant burden analysis
variant-burden
updated 10 months ago by
Ram
43k • written 2.0 years ago by
quentin54520
▴ 120
5
votes
7
replies
1.6k
views
Annotations vep : keep high impact in any transcript + canonical
annotations
Vep
ensembl
updated 2.1 years ago by
Ram
43k • written 2.1 years ago by
quentin54520
▴ 120
0
votes
1
reply
429
views
Vcf stat about consequences
Vcf
vep
statistic
updated 2.1 years ago by
Kevin Blighe
87k • written 2.1 years ago by
quentin54520
▴ 120
4
votes
7
replies
1.2k
views
Vcf : remove variant absent in affected sample
Vcf
updated 2.1 years ago by
sbstevenlee
▴ 480 • written 2.2 years ago by
quentin54520
▴ 120
0
votes
2
replies
620
views
Ensembl VEP on aws
Vep
aws
ensembl
2.2 years ago by
quentin54520
▴ 120
0
votes
1
reply
461
views
RNA-seq alignment in 2 pass mode
RNA-seq
alignment
2-PASS
updated 2.2 years ago by
brunobsouzaa
▴ 830 • written 2.2 years ago by
quentin54520
▴ 120
1
vote
5
replies
1.7k
views
Samtools on arm / aws
Samtools
arm
aws
updated 2.2 years ago by
aw7
▴ 270 • written 2.3 years ago by
quentin54520
▴ 120
1
vote
1
reply
720
views
Dragen joint genotyping
genotyping
Dragen
joint-genotyping
wgs
updated 20 months ago by
Jeremy Leipzig
22k • written 2.2 years ago by
quentin54520
▴ 120
1
vote
1
reply
774
views
Basespace illumina how to use ?
wgs
Basespace
illumina
updated 2.3 years ago by
GenoMax
142k • written 2.3 years ago by
quentin54520
▴ 120
1
vote
4
replies
1.9k
views
Dragen-gatk for trio
Gatk
germline
dragen
updated 2.4 years ago by
cpad0112
21k • written 2.4 years ago by
quentin54520
▴ 120
0
votes
0
replies
565
views
Gatk pipeline wdl on multiples sample input
Gatk
germline
2.4 years ago by
quentin54520
▴ 120
1
vote
1
reply
909
views
Vep : MNP phased genotype
mnp
Vep
phased
updated 2.6 years ago by
Ben_Ensembl
★ 2.4k • written 2.6 years ago by
quentin54520
▴ 120
0
votes
3
replies
2.0k
views
Alamut batch vs free annotation tools like VEP
genome
updated 18 months ago by
ED
• 0 • written 3.2 years ago by
quentin54520
▴ 120
1
vote
7
replies
2.5k
views
Ensembl vep singularity
vep
ensembl
Singularity
updated 11 months ago by
Ben_Ensembl
★ 2.4k • written 2.6 years ago by
quentin54520
▴ 120
0
votes
3
replies
1.2k
views
Dragen-gatk pipeline information ?
germline
gatk
dragen
wgs
updated 2.6 years ago by
German.M.Demidov
★ 2.9k • written 2.6 years ago by
quentin54520
▴ 120
0
votes
3
replies
1.3k
views
MarkduplicatesSpark How to speed-up ?
spark
gatk
genome
2.7 years ago by
quentin54520
▴ 120
1
vote
1
reply
711
views
GATK VQSR for human WGS
WGS
alignment
genome
updated 2.8 years ago by
samuelandjw
▴ 250 • written 2.8 years ago by
quentin54520
▴ 120
0
votes
0
replies
394
views
Germline calling with differents sample source
WGS
alignment
genome
2.8 years ago by
quentin54520
▴ 120
1
vote
4
replies
999
views
Filter bam file AND header
filter
header
BAM
2.8 years ago by
quentin54520
▴ 120
3
votes
3
replies
803
views
Ngs : how check if two samples come frome the same family?
exome
family
Genome
updated 2.8 years ago by
ATpoint
82k • written 2.8 years ago by
quentin54520
▴ 120
3
votes
2
replies
1.1k
views
gVCF size human genome
variant
Gatk
gvcf
2.9 years ago by
quentin54520
▴ 120
0
votes
0
replies
885
views
HaplotypeCaller run time ?
WGS
Haplotypecaller
GATK
3.0 years ago by
quentin54520
▴ 120
1
vote
4
replies
2.0k
views
HaplotypeCallerSpark
Variant
gatk
haplotypecaller
updated 2.1 years ago by
Mansi
• 0 • written 3.1 years ago by
quentin54520
▴ 120
0
votes
0
replies
761
views
SAM: why NM and MD tag are changed by the picard tool SetNmMdandUqtag ?
alignment
gatk
sam
3.1 years ago by
quentin54520
▴ 120
0
votes
0
replies
787
views
Should i calculated Nm, UQ and MD tag of bam ?
alignment
bam
gatk
3.1 years ago by
quentin54520
▴ 120
0
votes
2
replies
1.2k
views
Bam splitting index .sbi ?
alignment
index
gatk
updated 3.1 years ago by
Pierre Lindenbaum
161k • written 3.1 years ago by
quentin54520
▴ 120
3
votes
3
replies
786
views
Samtools sort by name - bam size issue
alignment
genome
samtools
updated 3.2 years ago by
Pierre Lindenbaum
161k • written 3.2 years ago by
quentin54520
▴ 120
0
votes
0
replies
713
views
Gatk spark beta
gatk
genome
spark
3.2 years ago by
quentin54520
▴ 120
0
votes
3
replies
835
views
Alignment: how to deal with read mapped on decoy
alignment
genome
updated 2.9 years ago by
berick
▴ 60 • written 3.2 years ago by
quentin54520
▴ 120
1
vote
4
replies
1.1k
views
How to optimized the alignment with bwa mem
genome
bwa
alignment
3.2 years ago by
quentin54520
▴ 120
0
votes
0
replies
629
views
Tools for structural variant on exome
exome
sequencing
SV
structural variant
3.2 years ago by
quentin54520
▴ 120
1
vote
5
replies
1.1k
views
Human WGS :which genome reference
genome
alignment
reference
updated 3.2 years ago by
ATpoint
82k • written 3.2 years ago by
quentin54520
▴ 120
0
votes
1
reply
1.3k
views
TORCH CUDA issue / cellpose
cuda
gpu
torch
updated 3.0 years ago by
Jean-Karim Heriche
27k • written 3.2 years ago by
quentin54520
▴ 120
3
votes
7
replies
1.7k
views
Which aligner for human WGS
WGS
alignment
genome
updated 21 months ago by
predeus
★ 2.0k • written 3.2 years ago by
quentin54520
▴ 120
4
votes
4
replies
3.1k
views
For loop with 2 variables
bash
fastp
updated 10 months ago by
Ram
43k • written 3.3 years ago by
quentin54520
▴ 120
0
votes
3
replies
2.0k
views
NGS : merge fastq
genome
merge
NGS
fastq
updated 3.3 years ago by
Pierre Lindenbaum
161k • written 3.3 years ago by
quentin54520
▴ 120
37 results • Page
1 of 1
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6