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121,931 results • Page
105 of 2439
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Votes
Replies
3
votes
2
replies
916
views
Combining microarray, RNA Seq, whole & exome sequencing
Microarray
RNA
updated 16 months ago by
i.sudbery
22k • written 16 months ago by
Nona
▴ 90
9
votes
6
replies
1.9k
views
PCA plot no distinct cluster. Only p < 0.05 indicates significant DEGs, while adj p < 0.05 does not.
RNA-seq
padj
p-value
16 months ago by
May Ling
▴ 10
1
vote
1
reply
553
views
Alternative Database for Somatic Indel Realignment (COSMIC Alternative)
COSMIC
updated 16 months ago by
DGTool
▴ 290 • written 16 months ago by
ManuelDB
▴ 110
0
votes
2
replies
1.5k
views
Minimap2 chimeric reads
minimap2
chimeric-reads
updated 16 months ago by
cmdcolin
★ 4.3k • written 16 months ago by
Fadwa
▴ 10
0
votes
7
replies
1.3k
views
small RNA-seq length distribution of 100nt?
small-rnaseq
fastp
mirnas
updated 16 months ago by
GenoMax
154k • written 16 months ago by
karlaarz
▴ 110
0
votes
0
replies
335
views
Estimate/calculate power for two-sample Mendelian randomization?
MR
16 months ago by
huynguyenacademia
• 0
1
vote
0
replies
464
views
Blog:
Long-read single-cell Sequencing
RNASeq
Long-read
single-cell
scRNA-Seq
transcriptomics
16 months ago by
Gabby
▴ 20
1
vote
2
replies
764
views
TSS sites annotation for hg38
tss
hg38
annotation
15 months ago by
octpus616
▴ 120
0
votes
0
replies
323
views
kegg pathway analysis
metabolic-pathway
Gibbs-energy
updated 16 months ago by
Ram
45k • written 16 months ago by
yuxiang
• 0
0
votes
2
replies
820
views
newbie question: why the length of adapter is not fixed?
Library
construction
Sequencing
16 months ago by
Dora
▴ 10
1
vote
5
replies
1.1k
views
CNVnator Installation
CNV
CNVnator
WGS
updated 16 months ago by
Ram
45k • written 16 months ago by
Wasim
• 0
6
votes
2
replies
1.7k
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
updated 16 months ago by
aw7
▴ 390 • written 17 months ago by
abhishekghadge
▴ 40
1
vote
7
replies
1.6k
views
Can I assemble chloroplast genome of plants using SRA data from NCBI and I can publish it ?
Chloroplast
genome
SRA
updated 16 months ago by
Istvan Albert
103k • written 16 months ago by
balajir24.smc
• 0
2
votes
1
reply
24k
views
Herald:
The Biostar Herald for Wednesday, May 29, 2024
herald
updated 16 months ago by
LChart
5.1k • written 16 months ago by
Biostar
3.6k
0
votes
1
reply
1.3k
views
enrichGO function produces NULL object
enrichGO
updated 16 months ago by
bk11
★ 3.1k • written 16 months ago by
rykers
• 0
2
votes
2
replies
734
views
Forum:
How Can BioJobs Lab Effectively Attract Top Talent and Employers in the Biotech Industry?
biotech
updated 16 months ago by
pairedttest
▴ 40 • written 16 months ago by
Darren
• 0
1
vote
1
reply
1.3k
views
vg call vs vg surject
vg
variation
graphs
updated 16 months ago by
glenn.hickey
▴ 550 • written 17 months ago by
aliraza3119
• 0
2
votes
4
replies
3.6k
views
How do I create a gff(3) file from a genebank file?
gff
genebank
updated 16 months ago by
Istvan Albert
103k • written 4.5 years ago by
torkel.loman
▴ 10
0
votes
0
replies
359
views
visualization of centromere
visualization
centromere
human
16 months ago by
kidpopaye
• 0
1
vote
1
reply
1.0k
views
Job:
Seeking remote internship in genomic analyses
NGS
genomics
variant-calling
16 months ago by
SlowSD
• 0
5
votes
9
replies
2.1k
views
VG view and VG chunk failed when using SequenceTubeMap
vg
vgteam
16 months ago by
gforg34
▴ 20
4
votes
2
replies
1.2k
views
cannot conda install macs3 on linux
atac
macs3
16 months ago by
QX
▴ 80
8
votes
6
replies
2.8k
views
NCBI vs Ensembl - Ortholog genes Information
Genomics
Orthologs
NCBI
Ensembl
15 months ago by
José
▴ 10
1
vote
2
replies
539
views
Chromosomal distribution of the trancscripts count
chrosome_location
updated 16 months ago by
ATpoint
89k • written 16 months ago by
Varsha
• 0
0
votes
4
replies
933
views
How to Split FASTQ File by UMI Indices into Multiple Files
SeqKit
UMI
split
fastq
updated 16 months ago by
GenoMax
154k • written 16 months ago by
LDT
▴ 340
0
votes
1
reply
559
views
Alternatives RAST annotation
database
alternative
RAST
annotation
updated 16 months ago by
GenoMax
154k • written 16 months ago by
emma.vankerckhove
• 0
7
votes
7
replies
1.6k
views
Constructing single sequence genome assembly out of short reads
short
reads
assembly
16 months ago by
analyst
▴ 70
9
votes
13
replies
2.3k
views
How do i calculate the mean of triplicates in a data.frame based on pattern?
tidyverse
r
updated 15 months ago by
gglim
▴ 220 • written 16 months ago by
Assa Yeroslaviz
★ 1.9k
3
votes
3
replies
995
views
RNA-Seq analysis
rna-seq
updated 16 months ago by
Physalia-courses
★ 2.6k • written 16 months ago by
zahrakhanyousufzai5
• 0
0
votes
5
replies
928
views
Filtering reads that map to both references
bwa
insertion
alignment
reference
updated 16 months ago by
Trivas
★ 1.9k • written 16 months ago by
michael.flower.14
▴ 210
0
votes
0
replies
326
views
Results of NOT FOUND encountered when running SCENIC
SCENIC
16 months ago by
smilewang997700
• 0
0
votes
1
reply
685
views
monocle3 dot plot by groups and each cell types
monocle3
R
updated 16 months ago by
zx8754
12k • written 16 months ago by
sooni
▴ 20
11
votes
12
replies
3.1k
views
Set the same Y scale for different plots
ggplot2
R
16 months ago by
G.S
▴ 60
3
votes
1
reply
875
views
Intersection of multiple vcf files
isec
vcf
bcftools
updated 16 months ago by
Jeremy Leipzig
23k • written 16 months ago by
avelarbio46
▴ 30
4
votes
3
replies
1.1k
views
when I use htslib to write a bam. Error of "truncated file" shows by samtools
bam
htslib
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Aaron
▴ 10
0
votes
0
replies
315
views
Using a within population reference genome - Recombination
relernn
vcf
popgen
recombination
16 months ago by
dylan
• 0
1
vote
1
reply
730
views
Why does WGCNA use weighted correlation instead of Pearson correlation?
wgcna
updated 11 months ago by
allingt
▴ 40 • written 16 months ago by
remagen
▴ 10
0
votes
0
replies
356
views
reference geome gaf file obsolent GO replacement
gaf
GO
16 months ago by
Nicolas
• 0
1
vote
1
reply
784
views
Can I count UMI-barcode combination without mapping?
HyDrop
protein
UMI
UMI-Tools
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Assa Yeroslaviz
★ 1.9k
1
vote
2
replies
757
views
How do I check if a DNA sequence of a gene is supported by RNAseq data?
Genetics
RNA-seq
Phase-variation
Alignment
16 months ago by
Jack
• 0
1
vote
4
replies
3.3k
views
Illumina EPIC v2 IlmnIDs and probe names
Illumina
EPIC
EPICv2
updated 16 months ago by
Papyrus
★ 3.1k • written 23 months ago by
christine.a.pedersen
▴ 20
5
votes
7
replies
3.1k
views
Best practices in Fungal Genome Assembly
illumina
assembly
nanopore
genome
updated 16 months ago by
samuel.a.odonnell
▴ 600 • written 16 months ago by
SomeOne
▴ 240
0
votes
4
replies
1.3k
views
Confirmation required on how DiffBind generates union of regions (min. 1bp overlap or gap)?
DiffBind
11 months ago by
Ian
6.1k
3
votes
2
replies
954
views
Is there any minimum number of counts in scRNAseq to consider that a gene is expressed?
scRNAseq
single-cell
seurat
scanpy
UMI
15 months ago by
ev97
▴ 40
1
vote
9
replies
5.0k
views
Error with pheatmap - 'from' must be a finite number
pheatmap
r
deseq2
updated 16 months ago by
zx8754
12k • written 16 months ago by
vmpsb
• 0
3
votes
7
replies
1.9k
views
Z score
Z-score
updated 16 months ago by
ATpoint
89k • written 16 months ago by
SKY
▴ 60
1
vote
2
replies
885
views
Polygenic Risk Score calculation
snp
polygene
prs
variants
16 months ago by
ashaneev07
▴ 50
1
vote
0
replies
329
views
EXOME DEPTH - CNV
CNV
16 months ago by
Neha
▴ 10
1
vote
5
replies
997
views
coding and non-coding region of the viral genome
viral-genome
updated 16 months ago by
dthorbur
★ 3.1k • written 16 months ago by
G.S
▴ 60
2
votes
2
replies
725
views
dbNSFP4.7a database format to Annovar Format?
snp
annovar
NGS
dbNSFP
updated 16 months ago by
Ram
45k • written 16 months ago by
Clark_BioMorgan
▴ 50
121,931 results • Page
105 of 2439
Recent Votes
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Looking to learn practical bioinformatics
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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