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121,932 results • Page
110 of 2439
Sort: Rank
Rank
Views
Votes
Replies
4
votes
4
replies
1.3k
views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
RNA-seq
patch
freeze
genome
updated 16 months ago by
Jeremy Leipzig
23k • written 16 months ago by
Ali
• 0
3
votes
3
replies
751
views
getting exon coordinates
genomics
updated 16 months ago by
Ram
45k • written 16 months ago by
Xbox_27
• 0
0
votes
4
replies
976
views
How to extract cells of different species after mapping with combined genome?
snRNA-seq
scRNA-seq
updated 16 months ago by
Tony
• 0 • written 16 months ago by
vk
▴ 10
1
vote
5
replies
1.7k
views
Can I perform a correlation test with 3 biological replicates per condition?
RNA-Seq
deseq2
updated 16 months ago by
Ram
45k • written 16 months ago by
manuelmourato25
• 0
3
votes
4
replies
1.3k
views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR
masspec
uORF
peptide
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Pierre Lindenbaum
166k
1
vote
1
reply
570
views
API kegg - IndexError: list index out of range
kegg
API
updated 16 months ago by
Nyksubuz
▴ 20 • written 16 months ago by
mirwa.zidi93
• 0
0
votes
0
replies
546
views
Blog:
The Current State and Future Prospects of Long-Read Sequencing
LRS
16 months ago by
Novogene
▴ 510
0
votes
0
replies
415
views
qPCR gene expression data analysis
qPCR
geneexpression
anova
16 months ago by
ebertomeup
• 0
0
votes
3
replies
924
views
Sam file Header problem
Sam
Header
problem
file
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
saifulislam99121
• 0
1
vote
3
replies
1.3k
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
offtopic
Degrees
python
updated 16 months ago by
Ram
45k • written 16 months ago by
kuttibiotech2009
▴ 30
0
votes
1
reply
1.2k
views
scRNAseq quality control weird double curve in nFeature vs nCount plot
scRNA-seq
QC
single
cell
BDRhapsody
analysis
updated 16 months ago by
valdirbarth
▴ 20 • written 2.4 years ago by
Salomé
• 0
0
votes
0
replies
435
views
select set of intervals that cover a genomic region
GRanges
bed
16 months ago by
ntsopoul
▴ 60
1
vote
1
reply
621
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
updated 16 months ago by
Ram
45k • written 16 months ago by
dwpeng
▴ 120
0
votes
4
replies
1.4k
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
16 months ago by
Luqman
• 0
2
votes
3
replies
1.1k
views
ggrepel function: geom_text_repel()
ggplot2
ggrepel
R
updated 16 months ago by
Ram
45k • written 16 months ago by
sooni
▴ 20
0
votes
4
replies
1.4k
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
16 months ago by
mavy
▴ 10
1
vote
1
reply
773
views
Calculate allelic frequency from VEP output vcf file
VEP
variant
16 months ago by
ramiro.barrantes
▴ 60
2
votes
6
replies
3.2k
views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
XML
ncbi
entrez-direct
updated 16 months ago by
Ram
45k • written 5.3 years ago by
millere
• 0
1
vote
3
replies
1.1k
views
What's next after GATK variant calling pipeline?
GATK
pipeline
figures
DNA-seq
updated 13 months ago by
Michael
56k • written 16 months ago by
mgranada3
▴ 60
0
votes
1
reply
514
views
Add line under stat test
stats
R
updated 16 months ago by
Nyksubuz
▴ 20 • written 16 months ago by
G.S
▴ 60
1
vote
5
replies
1.8k
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator
IGV
written 23 months ago by
Daniel
▴ 30
0
votes
0
replies
524
views
DOCK6 installation on MacOS M1
installation
troubleshooting
DOCK6
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Rodolfo Adrián
• 0
1
vote
4
replies
921
views
Genotyping sites with N in reference genome
GATK
UnifiedGenotyper
16 months ago by
shpak.max
▴ 60
2
votes
4
replies
1.7k
views
Can 5' and 3' scRNAseq be processed with the same pipeline?
singlecell
seurat
10XGenomics
scRNAseq
updated 16 months ago by
yura.grabovska
▴ 820 • written 16 months ago by
ev97
▴ 40
1
vote
16
replies
2.7k
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
updated 16 months ago by
GenoMax
154k • written 16 months ago by
hophuquy0944
• 0
0
votes
4
replies
1.0k
views
Sequencing Depth (Read Depth) Calculations
depth
16 months ago by
R.L.
• 0
0
votes
1
reply
558
views
Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
annotation
vcf
vep
zygosity
deepvariant
16 months ago by
asalimih
▴ 60
0
votes
0
replies
388
views
Is it okay to assemble my 12 metatranscriptome samples with Trinity separately?
trinity
metatranscriptome
16 months ago by
jway
• 0
2
votes
2
replies
1.3k
views
Cannot install bwa-mem2 via conda
conda
mamba
python
updated 16 months ago by
Ram
45k • written 16 months ago by
jsmith120f
• 0
2
votes
3
replies
1.2k
views
genome finishing
finishing
genome
updated 10 months ago by
sihan.bu
• 0 • written 16 months ago by
trezini
• 0
1
vote
5
replies
1.5k
views
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos
atacseq
updated 16 months ago by
Pierre Lindenbaum
166k • written 16 months ago by
biology_inform
▴ 60
1
vote
4
replies
1.0k
views
Add stats to boxplot in R
stats
R
16 months ago by
G.S
▴ 60
0
votes
1
reply
2.3k
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 16 months ago by
Papyrus
★ 3.1k • written 16 months ago by
yura.grabovska
▴ 820
0
votes
1
reply
1.3k
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Lélé
▴ 10
0
votes
5
replies
1.3k
views
calculating genomic coverage/ base overlap in R
genomics
updated 16 months ago by
1769mkc
★ 1.3k • written 16 months ago by
Xbox_27
• 0
1
vote
5
replies
1.6k
views
Annotating file using bcftools
annotation
plink
bcftools
16 months ago by
kl
▴ 20
0
votes
9
replies
3.2k
views
Duplicated reads (IDs) from nanopore sequencing
bam
nanopore
sequencing
16 months ago by
njornet
▴ 20
0
votes
3
replies
948
views
Problem with Calling Variants from RNA-Seq data
vcf
gatk
benchmark
giab
rna-seq
16 months ago by
Esraa
▴ 10
4
votes
4
replies
1.6k
views
Getting differential ChIP-seq peaks between conditions after calling consensus peaks
MAnorm
ChIP-seq
consensus
peaks
16 months ago by
Alexandra
• 0
4
votes
1
reply
999
views
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
limma
updated 16 months ago by
dariober
15k • written 16 months ago by
Holly
▴ 30
0
votes
0
replies
296
views
ReactomeGSA
ReactomeGSA
16 months ago by
Shaimaa Gamal
▴ 10
0
votes
0
replies
359
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
16 months ago by
Transmitting Science communication
▴ 70
2
votes
5
replies
1.3k
views
bbmerge (bbmap) ~ error with insert size file output
bbtools
bbmerge
bbmap
updated 16 months ago by
GenoMax
154k • written 16 months ago by
chrisk
• 0
0
votes
1
reply
822
views
perseus software (version 1.5.5)
mass
spectrometry
preseus
data
8 months ago by
Bioinformatics_16
• 0
0
votes
0
replies
394
views
Why the shape of RCS is contradictory to the p value for nonlinearity.
RCS
ggplot2
ggplot
R
updated 16 months ago by
GenoMax
154k • written 16 months ago by
Dude
• 0
0
votes
0
replies
359
views
NEURON, Brian2, NEST, or PyNN
NEST
NEURON
PyNN
Brian2
16 months ago by
brunofelicianodeomena
• 0
1
vote
2
replies
4.1k
views
Alphafold 3 pLDDT coloring scheme in chimerax?
ChimeraX
Alphaphold
Alphaphold3
updated 16 months ago by
colindaven
8.0k • written 16 months ago by
mbrav005
• 0
0
votes
1
reply
562
views
Polish a large genome with Pilon
Pilon
Pacbio
Polish
Illumina
16 months ago by
san96
▴ 190
1
vote
2
replies
758
views
Doubt about the process of annotation, detection, identification and classification of transposable elements
annotation
TransposableElements
16 months ago by
MarcosCosta
• 0
2
votes
2
replies
816
views
Genome Visualization Tools
bacterial
genome
updated 16 months ago by
GenoMax
154k • written 16 months ago by
dlera.lozano
▴ 10
121,932 results • Page
110 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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7.1k
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Recent Replies
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
Comment: Learning Biology/Bioinformatic Basics
by
Upesh
▴ 20
For anyone landing on this page, the updated link is: [https://www.langmead-lab.org/teaching.html][1] [1]: https://www.langmead-lab.org/…
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