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121,934 results • Page
120 of 2439
Sort: Rank
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Votes
Replies
0
votes
0
replies
327
views
How to get somatic variation based on RNA-seq data?
RNA-seq
variation
somatic
17 months ago by
feather-W
• 0
2
votes
4
replies
1.0k
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
17 months ago by
samuelkalandarov2002
▴ 20
0
votes
0
replies
444
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
17 months ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
736
views
Job:
Ensembl Plants Senior Bioinformatician
ebi
embl
genomics
ensembl
17 months ago by
Ben Moore
★ 2.4k
2
votes
4
replies
1.6k
views
What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
ChIP-seq
17 months ago by
HyperEvo
• 0
0
votes
2
replies
657
views
RNA-seq bacteria contamination
RNA-seq
15 months ago by
sh
• 0
0
votes
2
replies
649
views
Result of running of p3_in.pl
primer3
updated 17 months ago by
GenoMax
154k • written 17 months ago by
nasri
• 0
0
votes
1
reply
629
views
FAM FILE
file
Fam
17 months ago by
Eleonora
• 0
0
votes
0
replies
391
views
Imputation advice
imputation
17 months ago by
kl
▴ 20
3
votes
5
replies
1.0k
views
Per base sequence content error in RNAseq analysis
RNA-seq
analysis
updated 17 months ago by
GenoMax
154k • written 17 months ago by
ahmad.sajad4541
• 0
0
votes
0
replies
463
views
Trimming best practices for SNP calling
trimming
SNP
trimmomatic
17 months ago by
Enrique
• 0
3
votes
5
replies
1.5k
views
SLURM submission problem: Indexing the Reference Genome is not done in STAR
align
RNA-Seq
linux
STAR
17 months ago by
n_navy
▴ 10
0
votes
0
replies
365
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
17 months ago by
sativus
▴ 20
6
votes
3
replies
1.1k
views
Interpretting IGV output
IGV
updated 17 months ago by
Carlo Yague
9.0k • written 17 months ago by
analyst
▴ 70
0
votes
1
reply
543
views
homology modelling using swiss model
homology-modeling
swiss-model
updated 17 months ago by
colindaven
8.0k • written 17 months ago by
Ayush
• 0
0
votes
0
replies
301
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
17 months ago by
Biostars2200
• 0
1
vote
5
replies
1.3k
views
DYH17 Structure Prediction
BLAST
Protein-Structure-Prediction
17 months ago by
anasjamshed
▴ 140
0
votes
0
replies
461
views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
Ciriquant
updated 17 months ago by
Carlo Yague
9.0k • written 17 months ago by
Atul K.
• 0
3
votes
2
replies
900
views
p-value and Boneferroni adjusted p-value the same in R
Bonferroni
R
Statistics
p-value
Fisher
17 months ago by
kristiewyleung
• 0
2
votes
5
replies
1.7k
views
Marking duplicates using UMIs
UMI
Deduplication
6 months ago by
Lipika
• 0
0
votes
0
replies
410
views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated 17 months ago by
Ram
45k • written 17 months ago by
sainavyav22
• 0
0
votes
0
replies
434
views
Bacterial genome alignment with mauve
Bacteria
mauve
genome
17 months ago by
rthapa
▴ 90
0
votes
0
replies
506
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
17 months ago by
Mamatha Y S
• 0
0
votes
0
replies
426
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
0
votes
4
replies
1.3k
views
how to find genes that are significantly expressed in brain cortex samples
rna-seq
gene-expression
updated 17 months ago by
ATpoint
89k • written 17 months ago by
rheab1230
▴ 150
0
votes
2
replies
831
views
bam merging for archaic samples
samtools
bam
updated 17 months ago by
Ram
45k • written 17 months ago by
Matteo Ungaro
▴ 130
7
votes
6
replies
1.4k
views
Filtering sam or bam file with maximum matching region
crisper-edited
alignment
match
17 months ago by
analyst
▴ 70
1
vote
1
reply
755
views
Removing Illumina microarray probes with no expression HumanHT-12v4
microarray
HumanHT-12v4
Illumina
updated 17 months ago by
Gordon Smyth
★ 8.3k • written 17 months ago by
Bioinformatician
• 0
0
votes
0
replies
840
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
17 months ago by
mathavanbioinfo
▴ 80
1
vote
1
reply
885
views
GTF file from Stringtie to R Studio for either Ballgown or DESeq2
Stringtie
Cufflinks
Ballgown
DESeq2
updated 17 months ago by
Ram
45k • written 17 months ago by
Nina
• 0
2
votes
5
replies
3.0k
views
MEGA Analysis Issue on High-Performance Computer
phylogenetic-analysis
MEGA
updated 17 months ago by
Mensur Dlakic
★ 30k • written 17 months ago by
Giorgio
• 0
2
votes
1
reply
915
views
Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits
shotgun
metagenomics
blastp
taxonomy
updated 17 months ago by
GenoMax
154k • written 17 months ago by
rebecca.calvo
• 0
2
votes
5
replies
1.8k
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 17 months ago by
Jesse
▴ 880 • written 17 months ago by
Ann
★ 2.4k
0
votes
0
replies
505
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 17 months ago by
Ram
45k • written 17 months ago by
mja
• 0
0
votes
0
replies
447
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
17 months ago by
Nitin
• 0
1
vote
5
replies
1.9k
views
Duplicate marking, read names, and the SRA
SRA
MarkDuplicates
updated 17 months ago by
GenoMax
154k • written 17 months ago by
Luka
• 0
0
votes
0
replies
424
views
Chemical structure validation
structure
cap
validation
metabolite
17 months ago by
Rodolfo Adrián
• 0
3
votes
8
replies
2.9k
views
Cellranger count error: Input FASTQ file ended prematurely
scRNA-seq
Cellranger
STARsolo
10X
updated 17 months ago by
swbarnes2
15k • written 2.2 years ago by
bp22
▴ 80
0
votes
1
reply
651
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 17 months ago by
GenoMax
154k • written 17 months ago by
bioyas
▴ 20
0
votes
0
replies
511
views
Copy number variation plot
Copy-number-variation
genomics
updated 17 months ago by
Ram
45k • written 17 months ago by
Emmi
• 0
1
vote
5
replies
1.6k
views
RNA seq differential expression analysis
RNA-seq
normalization
updated 17 months ago by
BioinfGuru
★ 2.1k • written 17 months ago by
rrehimi
• 0
0
votes
1
reply
646
views
Could you please assist in identifying this cluster?
single-cell
updated 17 months ago by
Ram
45k • written 17 months ago by
carolofharvest
▴ 50
4
votes
9
replies
3.3k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
RNA-Seq
written 9.7 years ago by
dvelmeshev
• 0
2
votes
7
replies
6.4k
views
6 follow
Memory usage of picard Samsort
Picard
SortSam
updated 17 months ago by
ATpoint
89k • written 8.6 years ago by
boymin2020
▴ 80
9
votes
13
replies
8.7k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 17 months ago by
ATpoint
89k • written 17 months ago by
BioinfGuru
★ 2.1k
1
vote
1
reply
946
views
Plink merge errors.
cygwin64
bed
PLINK
17 months ago by
Dinmukhamed
▴ 10
0
votes
0
replies
480
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 17 months ago by
Ram
45k • written 17 months ago by
Dinmukhamed
▴ 10
0
votes
0
replies
433
views
miRDeep2: How to get the read counts
mirdeep2
17 months ago by
Atul K.
• 0
3
votes
4
replies
1.5k
views
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
mapping
17 months ago by
rahu
• 0
0
votes
0
replies
457
views
Lncipedia GTF file error
Proteomics
updated 17 months ago by
Ram
45k • written 17 months ago by
atharvakarkare14
▴ 40
121,934 results • Page
120 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Recent Replies
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
Thank you, genomax, for the recommendations! Very helpful!
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