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121,934 results • Page
121 of 2439
Sort: Rank
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Votes
Replies
8
votes
3
replies
6.0k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Genome
Annotation
RNAmmer
rRNA
7 months ago by
Arslan Tariq
▴ 140
3
votes
3
replies
1.3k
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 17 months ago by
swbarnes2
15k • written 17 months ago by
noodle
▴ 650
0
votes
2
replies
1.1k
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
17 months ago by
航太郎
• 0
12
votes
12
replies
3.1k
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 12 months ago by
Ram
45k • written 17 months ago by
iamsmor
• 0
0
votes
0
replies
398
views
create genewise sync file in popoolation
popoolation
updated 17 months ago by
GenoMax
154k • written 17 months ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
787
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
17 months ago by
Ashok
• 0
0
votes
2
replies
911
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
17 months ago by
Ashok
• 0
1
vote
0
replies
575
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 17 months ago by
Ram
45k • written 17 months ago by
samuelkalandarov2002
▴ 20
0
votes
2
replies
928
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
17 months ago by
_quantum_girl_
▴ 60
0
votes
0
replies
629
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
17 months ago by
Javier
• 0
1
vote
4
replies
1.8k
views
What happened to Tombo Re-squiggle
Tombo
resquiggle
ONT
updated 17 months ago by
Ram
45k • written 20 months ago by
turcoa1
• 0
0
votes
0
replies
562
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
17 months ago by
enferdeflame
• 0
1
vote
1
reply
907
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 17 months ago by
Gordon Smyth
★ 8.3k • written 17 months ago by
Chris
▴ 360
0
votes
0
replies
522
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
3
votes
9
replies
1.9k
views
How can I retrieve wheat lysine non-acetylated sequences from the UniProt database?
UniProt
updated 17 months ago by
Elisabeth Gasteiger
★ 2.4k • written 17 months ago by
Jacky
• 0
0
votes
1
reply
931
views
10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 17 months ago by
GenoMax
154k • written 17 months ago by
predeus
★ 2.1k
0
votes
1
reply
597
views
DEseq2
RNA-seq
DESeq2
updated 17 months ago by
Ram
45k • written 17 months ago by
rrehimi
• 0
0
votes
0
replies
472
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 17 months ago by
Ram
45k • written 17 months ago by
Physalia-courses
★ 2.6k
4
votes
2
replies
1.3k
views
Assume "yes" as the answer to any prompts with bioconda
docker
container
bioconda
updated 17 months ago by
Juke34
9.3k • written 17 months ago by
njornet
▴ 20
1
vote
0
replies
1.3k
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
17 months ago by
Novogene
▴ 510
0
votes
1
reply
718
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 17 months ago by
Ram
45k • written 3.0 years ago by
Muhammad
▴ 10
3
votes
3
replies
1.2k
views
Korean human genome reference file
GWAS
reference
imputation
17 months ago by
SeoG
▴ 10
0
votes
0
replies
369
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 17 months ago by
Ram
45k • written 17 months ago by
bioinfo223
▴ 10
0
votes
0
replies
433
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
17 months ago by
ekirsch
• 0
1
vote
1
reply
951
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
17 months ago by
renan.igor
• 0
2
votes
1
reply
702
views
Pediococcus acidilactici sequence analysis
BLAST
Gene-Ontology
updated 17 months ago by
Ram
45k • written 17 months ago by
anasjamshed
▴ 140
3
votes
1
reply
1.2k
views
What is the normalization status of metabric data?
metabric
normalization
microarray
cbioportal
updated 17 months ago by
etiennedanis
▴ 20 • written 3.0 years ago by
DareDevil
★ 4.4k
0
votes
0
replies
1.0k
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
17 months ago by
synat.keam
▴ 120
0
votes
1
reply
566
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 17 months ago by
GenoMax
154k • written 17 months ago by
ycts
• 0
5
votes
4
replies
2.4k
views
DEG analysis of RNA-seq data across multiple tissues and two conditions
RNA-seq
EdgeR
DEGs
DESeq2
17 months ago by
BioinfGuru
★ 2.1k
1
vote
1
reply
821
views
Inconsistency in SNP detection pipelines for multi-sample analysis
vcf
bam
bcf
snps
updated 17 months ago by
LChart
5.1k • written 17 months ago by
George
▴ 20
0
votes
4
replies
1.3k
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
17 months ago by
Kai Xin
• 0
1
vote
1
reply
533
views
Retrieve a % coverage for each transcript
RNA-seq
updated 17 months ago by
Ram
45k • written 17 months ago by
jammydodger123456
▴ 40
0
votes
2
replies
854
views
How can I solve this error?
metal
17 months ago by
22211020193
• 0
0
votes
0
replies
415
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 17 months ago by
GenoMax
154k • written 17 months ago by
srimmer
• 0
1
vote
4
replies
976
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 16 months ago by
GenoMax
154k • written 17 months ago by
aniigodwinn
• 0
2
votes
3
replies
1.2k
views
Sheep reference genome remapping coordinates
reference
remap
sheep
coordinates
genome
17 months ago by
valentinatsar
• 0
2
votes
3
replies
1.3k
views
Editing Human Reference Genome by adding a CDS
gff
agat
transcriptome
updated 17 months ago by
Michael
56k • written 17 months ago by
LDT
▴ 340
3
votes
11
replies
2.5k
views
Questions about a bug when transferring cram file to bam file
sequence
samtools
bcftools
updated 17 months ago by
jkbonfield
★ 1.3k • written 17 months ago by
me
• 0
2
votes
2
replies
1.1k
views
differential gene expression analysis when not all samples have an untreated counterpart
differential-expression
edgeR
17 months ago by
nhaus
▴ 420
0
votes
0
replies
632
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
17 months ago by
Ronin
▴ 10
4
votes
2
replies
3.7k
views
How to convert SAM/BAM file to GTF/GFF file?
GTF
SAM
BAM
GFF
minimap2
updated 17 months ago by
Arslan Tariq
▴ 140 • written 2.4 years ago by
BioinfoBee
• 0
3
votes
7
replies
2.6k
views
Removing duplicates
duplicates
ONT
minimap2
updated 17 months ago by
noodle
▴ 650 • written 17 months ago by
quentinperriere
• 0
0
votes
1
reply
717
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 17 months ago by
DKA
▴ 40 • written 17 months ago by
james.melhorn
• 0
5
votes
4
replies
3.5k
views
biomaRt error for different R version
biomaRt
R
updated 17 months ago by
GenoMax
154k • written 17 months ago by
manaswwm
▴ 570
0
votes
1
reply
519
views
Freyja plot error
Freyja
updated 17 months ago by
Ram
45k • written 17 months ago by
Adyasha
• 0
1
vote
2
replies
666
views
Interpretation of combined P values - RNA microarray meta analysis
metaanalysis
R
microarray
DExMA
combinedP
17 months ago by
hagl
▴ 20
0
votes
0
replies
415
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
17 months ago by
chemokine-1
▴ 10
0
votes
4
replies
1.8k
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
17 months ago by
feather-W
• 0
0
votes
0
replies
563
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
17 months ago by
Ali
• 0
121,934 results • Page
121 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Recent Awards •
All
Popular Question
to
Arindam
▴ 10
Popular Question
to
Jeremy Leipzig
23k
Popular Question
to
nuorain
▴ 40
Popular Question
to
Rob
7.1k
Popular Question
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m90
▴ 30
Popular Question
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Chris
▴ 360
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BioinfoBee
• 0
Recent Replies
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
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