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121,935 results • Page
122 of 2439
Sort: Rank
Rank
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Votes
Replies
0
votes
0
replies
563
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
17 months ago by
Ali
• 0
2
votes
4
replies
913
views
SnpEff annotates coding duplication as intronic?
snpeff
17 months ago by
kirill.zaslavsky
• 0
0
votes
4
replies
1.1k
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
13 months ago by
mropri
▴ 170
5
votes
4
replies
3.8k
views
genefu for PAM50 prediction
RNA-Seq
breast cancer
subtyping
updated 17 months ago by
hamarillo
▴ 80 • written 7.1 years ago by
silviajserrano
▴ 50
3
votes
10
replies
1.6k
views
Piping samtools to R
R
NGS
bash
samtools
17 months ago by
noodle
▴ 650
3
votes
2
replies
1.4k
views
How to filter columns in a raw sparse matrix in R
matrix
R
updated 17 months ago by
bk11
★ 3.1k • written 17 months ago by
bgbs
• 0
3
votes
7
replies
1.4k
views
Integration of transcriptomics and proteomics: difficult matching names
rna-seq
tmt
nomenclature
proteomics
17 months ago by
ntsopoul
▴ 60
0
votes
2
replies
686
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
updated 8 months ago by
James
• 0 • written 17 months ago by
shasabhi1
• 0
3
votes
3
replies
1.1k
views
trouble using sequenceTubeMap in chromium installed on WSL
vg
17 months ago by
ayushm64
• 0
0
votes
0
replies
517
views
what exactly is a k-mer table (remora)?
remora
basecall
17 months ago by
anne
• 0
3
votes
6
replies
13k
views
List of species in RepeatMasker Tool (species parameter)
RepeatMasker
Masking
updated 17 months ago by
Bioinfotec
▴ 20 • written 9.0 years ago by
nut_B
▴ 10
1
vote
6
replies
1.9k
views
Rename multiple fastq.gz files
fastq
next-gen
updated 17 months ago by
shenwei356
8.7k • written 17 months ago by
Jérémie
• 0
1
vote
1
reply
519
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 17 months ago by
dsull
★ 7.7k • written 17 months ago by
niruf
• 0
0
votes
0
replies
664
views
Job:
Ensembl Outreach Project Leader
ebi
embl
genomics
ensembl
17 months ago by
Ben Moore
★ 2.4k
3
votes
3
replies
997
views
Bwa sampe - BGI
Bwa-sampe
BGI
updated 17 months ago by
GenoMax
154k • written 17 months ago by
lorena9132
▴ 10
0
votes
0
replies
723
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 17 months ago by
Ram
45k • written 17 months ago by
David Langenberger
11k
5
votes
2
replies
867
views
Forum:
Bioinformatics: Where do I start
Sequencing
updated 17 months ago by
Ram
45k • written 17 months ago by
Adi
▴ 20
0
votes
2
replies
953
views
GSEA analysis in R
GSEA
R
Arabidopsis
17 months ago by
Sudip
• 0
1
vote
2
replies
1.7k
views
Visualization of PROKKA Annotation Result?
PROKKA
Annotation
updated 17 months ago by
Joe
22k • written 17 months ago by
ferdinand
▴ 10
0
votes
2
replies
797
views
Which experiments generate Position Frequency Matrix?
Position-Frequency-Matrix
17 months ago by
Anisur Rahman
▴ 80
2
votes
2
replies
1.1k
views
I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calculated solely from the raw file (count matrix) provided in the Suppleme…
GEO
velocity
count-matrix
updated 17 months ago by
Ram
45k • written 17 months ago by
Spring
• 0
0
votes
0
replies
369
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
17 months ago by
QX
▴ 80
5
votes
4
replies
1.4k
views
I'm new to cell ranger. Can single cells prepared with a protocol other than the 10x genomics protocol not be processed with cell ranger?
cellranger
scRNA-seq
10x
17 months ago by
Spring
• 0
2
votes
5
replies
1.5k
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
17 months ago by
Bikram Kumar
• 0
1
vote
1
reply
1.1k
views
WGCNA network from Adjacency or TOM matrix
WGCNA
network
updated 17 months ago by
andres.firrincieli
3.9k • written 17 months ago by
Milly
• 0
0
votes
1
reply
541
views
Error in edgeR/Deseq2 Analysis
r
edger
updated 17 months ago by
ATpoint
89k • written 17 months ago by
Ravita
• 0
0
votes
2
replies
1.3k
views
Getting marker genes for cell types
clustering
marker-genes
umap
17 months ago by
orzrzlyo
▴ 20
0
votes
1
reply
784
views
gene body coverage with RSeqQC
rna-seq
qc
updated 17 months ago by
BioinfGuru
★ 2.1k • written 17 months ago by
wiscoyogi
▴ 40
0
votes
2
replies
708
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 17 months ago by
Ram
45k • written 17 months ago by
David
• 0
0
votes
1
reply
1.5k
views
Using adonis to include a random effect
mixed-model
adonis
updated 17 months ago by
LChart
5.1k • written 17 months ago by
leranwangcs
▴ 150
1
vote
3
replies
1.5k
views
how to get the variance explained by the independent variable from multivariate distance matrix regression model with random effect?
multivariate-distance-matrix
regression
updated 17 months ago by
LChart
5.1k • written 17 months ago by
leranwangcs
▴ 150
1
vote
2
replies
921
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
17 months ago by
bioinfo
▴ 160
0
votes
1
reply
915
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 17 months ago by
bk11
★ 3.1k • written 17 months ago by
sinhas
• 0
1
vote
5
replies
1.2k
views
Best way to deal with overlapping read names in merged BAM files
picard
MarkDuplicates
17 months ago by
shpak.max
▴ 60
0
votes
1
reply
686
views
merging Seurat objects after SCT
Seurat
SCT
updated 17 months ago by
Ram
45k • written 17 months ago by
michelle.swarovski
• 0
0
votes
1
reply
635
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 17 months ago by
GenoMax
154k • written 17 months ago by
haiying.kong
▴ 360
0
votes
2
replies
762
views
RNAseq 1 control 2 different treatment
RNA-seq
17 months ago by
matteo.levorato
• 0
1
vote
0
replies
400
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 17 months ago by
Ram
45k • written 17 months ago by
Oscar
▴ 10
1
vote
2
replies
1.6k
views
CombineGVCFs vs. MergeVcfs
CombineGVCFs
MergeVcfs
GATK
WGS
GVCF
updated 17 months ago by
Jeremy Leipzig
23k • written 17 months ago by
Sd
• 0
0
votes
0
replies
414
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 17 months ago by
Ram
45k • written 17 months ago by
polarise
▴ 380
2
votes
2
replies
971
views
Problem with Sniffles pipeline and SV calling help
SV
sniffles
StructuralVariant
updated 17 months ago by
GenoMax
154k • written 17 months ago by
njornet
▴ 20
6
votes
0
replies
799
views
Herald:
The Biostar Herald for Monday, April 15, 2024
herald
17 months ago by
Biostar
3.6k
3
votes
1
reply
876
views
Trouble understanding seemingly contradicting results of GSE analysis (contradicting enriched GO terms with similar negative NES scores)
GSEA
pathways
GO-terms
updated 17 months ago by
i.sudbery
22k • written 17 months ago by
Manko47
▴ 10
4
votes
6
replies
1.3k
views
Odd results with BLAST remote
blast
remote
NCBI
updated 17 months ago by
b.contreras.moreira
▴ 490 • written 17 months ago by
Begonia_pavonina
▴ 210
9
votes
9
replies
2.8k
views
BRAKER3 genome annotation
annotation
BRAKER3
genome
updated 15 months ago by
andorjkiss
▴ 50 • written 17 months ago by
manaswiniparija3
▴ 60
2
votes
0
replies
506
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
17 months ago by
Alexander
▴ 220
1
vote
6
replies
1.3k
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 17 months ago by
GenoMax
154k • written 17 months ago by
eebloom
▴ 110
0
votes
0
replies
367
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
17 months ago by
Balazs Horvath
▴ 10
0
votes
0
replies
430
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
17 months ago by
adarsh
▴ 60
2
votes
4
replies
1.7k
views
Which command ro run MAKER pipeline for gene annotation ?
run.
command
to
MAKERpipeline.
updated 17 months ago by
GenoMax
154k • written 17 months ago by
Sony
▴ 20
121,935 results • Page
122 of 2439
Recent Votes
What happened to biomart.org
Answer: allele frequency in VCF
Understanding terms, specifically relating to GT:PL in a VCF file
Comment: Looking to learn practical bioinformatics
Answer: WGCNA package in R: dendogram plot error
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
Answer: Does this adapter content from fastqc to warrant trimming prior to alignment?
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Recent Replies
Comment: real time PCR data analysis
by
ATpoint
89k
I cannot guide on GraphPad. It's commercial software so better contact their support.
Answer: Linear regression vs DESeq2 models for DEG analysis
by
swbarnes2
15k
DE genes in bulk RNASeq is what DESeq2 was made for, so why wouldn't you use it? RPKM is not an appropriate normalization method here. M…
Comment: What happened to biomart.org
by
Jeremy Leipzig
23k
same with geuvadis.org
Comment: real time PCR data analysis
by
Gordon Smyth
★ 8.3k
Are you doing qPCR for one gene or for several genes?
Comment: protein interaction prediction
by
Fatemeh
▴ 50
Thanks very much for your help. I need to try it.
Comment: real time PCR data analysis
by
Fatemeh
▴ 50
Thanks a lot for the link. The problem is that with this repeated measures, if you put the data from different donors in different rows, fo…
Answer: What happened to biomart.org
by
GenoMax
154k
Looks like EBI let the domain registration expire. The domain was picked up by someone else and turned into the site OP mentions. There use…
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
154k
> I want to reconstruct the assembly using the pacbio reads only. Is there a paper associated with this data? If the original publication/…
Comment: real time PCR data analysis
by
ATpoint
89k
I think the keyword to go after here is repeated measures https://www.graphpad.com/guides/prism/latest/statistics/repeated_measures.htm
Answer: What happened to biomart.org
by
ATpoint
89k
Maybe I am missing sth because I've never used the website but only the API and R interface, but I think the website has always been https:…
Comment: protein interaction prediction
by
Fatemeh
▴ 50
It is most probably binding to a protein. Its function is somehow known though, which is good . Thanks very much for the link. I will have …
Comment: Looking to learn practical bioinformatics
by
Upesh
▴ 20
ATpoint, you are absolutely bang on. In fact, my intention is not to switch careers but to connect with this field and build tools/systems …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
I am trying to reproduce the assembly from the raw pacbio reads. I want to reconstruct the assembly using the pacbio reads only.
Comment: Does this adapter content from fastqc to warrant trimming prior to alignment?
by
ATpoint
89k
I would trim it. Two percent is not much but with WGS, say you have 400mio reads per sample or so, it's still millions of reads that theore…
Comment: Looking to learn practical bioinformatics
by
ATpoint
89k
> How do I connect the dots to a grand vision of drug discovery, DNA analysis, disease etc. Despite that computational-driven data analys…
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